CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000013822
(
Pongo pygmaeus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSPPYG00000013822
T19346_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.742
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.716
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.716
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.705
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.705
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000015469
KH
19
79
TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI
ENSPPYP00000015469
KH
103
166
TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQI
ENSPPYP00000015469
KH
243
305
SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI
Links
Other
KH
family RBPs
Other
Pongo pygmaeus
RBPs
99 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R020987
Ailuropoda melanoleuca
Ame_R020987
N
0.000
SRSF11
Anolis carolinensis
ENSACAG00000013654
N
0.000
Q148M1_BOVIN
Bos taurus
ENSBTAG00000015474
N
0.000
ENSCJAG00000009424
Callithrix jacchus
ENSCJAG00000009424
N
0.000
LOC100400412
Callithrix jacchus
ENSCJAG00000017704
N
0.000
SRSF11
Cavia porcellus
ENSCPOG00000009554
N
0.000
srsf11
Danio rerio
ENSDARG00000004342
N
0.000
SREK1
Dasypus novemcinctus
ENSDNOG00000010327
N
0.000
Srsf11
Dipodomys ordii
ENSDORG00000000669
N
0.000
SRSF11
Erinaceus europaeus
ENSEEUG00000002456
N
0.000
Q5ZJ42_CHICK
Gallus gallus
ENSGALG00000011305
N
0.000
SRSF11
Gasterosteus aculeatus
ENSGACG00000009346
N
0.000
SRSF11
Gasterosteus aculeatus
ENSGACG00000017855
N
0.000
SRSF11
Gorilla gorilla
ENSGGOG00000005774
N
0.000
SRSF11
Homo sapiens
ENSG00000116754
N
0.000
SRSF11
Loxodonta africana
ENSLAFG00000015882
N
0.000
SFRS11
Macaca mulatta
ENSMMUG00000013852
N
0.000
SRSF11
Macropus eugenii
ENSMEUG00000000319
N
0.000
SRSF11
Microcebus murinus
ENSMICG00000005537
N
0.000
SRSF11
Monodelphis domestica
ENSMODG00000000559
N
0.000
Srsf11
Mus musculus
ENSMUSG00000055436
N
0.000
SRSF11
Myotis lucifugus
ENSMLUG00000006203
N
0.000
SRSF11
Ornithorhynchus anatinus
ENSOANG00000015528
N
0.000
ENSOCUG00000024114
Oryctolagus cuniculus
ENSOCUG00000024114
N
0.000
ENSOCUG00000002001
Oryctolagus cuniculus
ENSOCUG00000002001
N
0.000
SRSF11
Oryzias latipes
ENSORLG00000007753
N
0.000
SRSF11
Oryzias latipes
ENSORLG00000017357
N
0.000
SRSF11
Pan troglodytes
ENSPTRG00000000852
N
0.000
ENSPPYG00000001245
Pongo pygmaeus
ENSPPYG00000001245
N
0.000
ENSPPYG00000015515
Pongo pygmaeus
ENSPPYG00000015515
N
0.000
SRSF11
Procavia capensis
ENSPCAG00000012684
N
0.000
SRSF11
Pteropus vampyrus
ENSPVAG00000011918
N
0.000
D3ZDC8_RAT
Rattus norvegicus
ENSRNOG00000029592
N
0.000
SRSF11
Sorex araneus
ENSSARG00000005811
N
0.000
SRSF11
Sus scrofa
ENSSSCG00000003791
N
0.000
SRSF11
Takifugu rubripes
ENSTRUG00000009316
N
0.000
SRSF11
Takifugu rubripes
ENSTRUG00000017369
N
0.000
SRSF11
Tetraodon nigroviridis
ENSTNIG00000008514
N
0.000
SRSF11
Tetraodon nigroviridis
ENSTNIG00000010494
N
0.000
SRSF11
Tupaia belangeri
ENSTBEG00000004406
N
0.000
SRSF11
Tursiops truncatus
ENSTTRG00000015054
N
0.000
AAH72078
Xenopus laevis
AAH72078
N
0.000
AAI10935
Xenopus laevis
AAI10935
N
0.000
srsf11
Xenopus tropicalis
ENSXETG00000012371
N
0.000