CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Tursiops truncatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTTRG00000010390
T19713_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
1.000
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
1.000
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
1.000
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000009850
KH
131
193
TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML
ENSTTRP00000009850
KH
220
284
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMV
ENSTTRP00000009850
KH
309
371
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSTTRP00000009850
KH
411
476
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Tursiops truncatus
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
1.000
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.767
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.763
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.996
LOC505564
Bos taurus
ENSBTAG00000021018
I
1.000
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.770
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.770
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
1.000
KHSRP
Canis familiaris
ENSCAFG00000018667
I
1.000
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.770
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
1.000
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.770
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.767
KHSRP
Danio rerio
ENSDARG00000026489
I
0.914
fubp1
Danio rerio
ENSDARG00000029248
I
0.716
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.904
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.770
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.996
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.891
LOC100065608
Equus caballus
ENSECAG00000018305
I
1.000
FUBP1
Equus caballus
ENSECAG00000010867
I
0.770
KHSRP
Felis catus
ENSFCAG00000003731
I
1.000
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.761
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.872
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.714
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.860
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.774
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
1.000
FUBP1
Homo sapiens
ENSG00000162613
I
0.774
KHSRP
Homo sapiens
ENSG00000088247
D
1.000
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.996
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.770
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
1.000
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.774
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.953
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.759
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.984
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.934
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.770
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.996
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.770
KHSRP
Myotis lucifugus
ENSMLUG00000015543
I
0.848
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.992
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.891
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.770
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.710
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.809
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.716
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.770
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.774
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
1.000
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.774
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
1.000
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.856
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.770
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.844
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.996
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.763
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
1.000
KHSRP
Sus scrofa
ENSSSCG00000013538
I
1.000
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.770
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.770
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.749
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.712
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.809
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.763
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.802
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.770
KHSRP
Vicugna pacos
ENSVPAG00000010837
I
0.767
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.770
AAN77160
Xenopus laevis
AAN77160
I
0.926
AAI69923
Xenopus laevis
AAI69923
I
0.926
AAI69815
Xenopus laevis
AAI69815
I
0.747
AAI61696
Xenopus laevis
AAI61696
I
0.922
AAH70981
Xenopus laevis
AAH70981
I
0.747
AAH44277
Xenopus laevis
AAH44277
I
0.751
AAN77161
Xenopus laevis
AAN77161
I
0.728
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.755
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.837