LOC_Os08g40830 (Oryza sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 LOC_Os08g40830 T24392_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g40830.1 PUF 1470 1504
LOC_Os08g40830.1 PUF 1506 1540
LOC_Os08g40830.1 PUF 1542 1576
LOC_Os08g40830.1 PUF 1578 1611
LOC_Os08g40830.1 PUF 1614 1648
LOC_Os08g40830.1 PUF 1651 1686
LOC_Os08g40830.1 PUF 1687 1721
LOC_Os08g40830.1 PUF 1729 1763
LOC_Os08g40830.2 PUF 1470 1504
LOC_Os08g40830.2 PUF 1506 1540
LOC_Os08g40830.2 PUF 1542 1576
LOC_Os08g40830.2 PUF 1578 1611
LOC_Os08g40830.2 PUF 1614 1648
LOC_Os08g40830.2 PUF 1651 1686
LOC_Os08g40830.2 PUF 1687 1721
LOC_Os08g40830.2 PUF 1729 1763
LOC_Os08g40830.3 PUF 677 711
LOC_Os08g40830.3 PUF 713 747
LOC_Os08g40830.3 PUF 749 783
LOC_Os08g40830.3 PUF 785 818
LOC_Os08g40830.3 PUF 821 855
LOC_Os08g40830.3 PUF 858 893
LOC_Os08g40830.3 PUF 894 928
LOC_Os08g40830.3 PUF 936 970

Links

Other PUF family RBPs
Other Oryza sativa RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.718
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.907
BRADI4G34110 Brachypodium distachyon BRADI4G34110 N 0.712
PK12245.1 Cannabis sativa PK12245.1 N 0.753
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.762
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.727
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.742
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.746
MDP0000265231 Malus x domestica MDP0000265231 N 0.760
MDP0000313902 Malus x domestica MDP0000313902 N 0.740
MDP0000277305 Malus x domestica MDP0000277305 N 0.765
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.749
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.758
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.724
mgf006786m Mimulus guttatus mgf006786m N 0.727
mgf002285m Mimulus guttatus mgf002285m N 0.721
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 1.000
LOC_Os09g32210 Oryza sativa LOC_Os09g32210 N 0.736
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.702
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.709
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.727
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.762
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.731
ppa000898m Prunus persica ppa000898m N 0.746
ppa016404m Prunus persica ppa016404m N 0.752
30169.m006300 Ricinus communis 30169.m006300 N 0.762
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.716
SB03G039600 Sorghum bicolor Sb03g039600 N 0.702
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.921
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.763
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.777
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.932
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.904