CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000001875
T35474_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000003420
RRM
102
172
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRVSGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSCJAP00000003420
RRM
235
304
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSCJAP00000003420
RRM
501
569
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
ENSCJAP00000003429
RRM
102
172
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSCJAP00000003429
RRM
235
304
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQSISMFNGQFLFDRPMH
ENSCJAP00000003429
RRM
525
593
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
ENSCJAP00000046043
RRM
102
125
VFISNIPYDMKWQAIKDLMREKGC
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.995
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.768
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.948
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
1.000
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.768
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.768
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.995
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.768
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.768
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.948
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.768
myef2
Danio rerio
ENSDARG00000059398
N
0.876
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.703
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.990
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.768
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.768
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.995
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.995
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.759
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.881
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.738
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.768
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
1.000
MYEF2
Homo sapiens
ENSG00000104177
N
0.995
HNRNPM
Homo sapiens
ENSG00000099783
N
0.768
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.990
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.768
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.995
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.768
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.703
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.995
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.755
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.749
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.910
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.768
Myef2
Mus musculus
ENSMUSG00000027201
N
0.986
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.786
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.763
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.763
MYEF2
Myotis lucifugus
ENSMLUG00000006781
N
0.762
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.871
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.717
MYEF2
Ornithorhynchus anatinus
ENSOANG00000007375
N
0.743
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.768
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.995
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.768
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.881
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.729
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.890
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.768
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
1.000
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.768
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.995
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.758
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.995
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.771
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.990
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.768
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.876
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.736
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.786
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.719
MYEF2
Sus scrofa
ENSSSCG00000004661
N
1.000
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.768
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.990
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.714
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.883
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.929
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.891
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.710
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.754
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.768
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.995
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.995
AAI08588
Xenopus laevis
AAI08588
N
0.900
AAI34826
Xenopus laevis
AAI34826
N
0.725
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.910