GL26299 (Drosophila persimilis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0163881 T43773_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.972
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.745
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.745
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.745
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.736
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.736
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0190406 RRM 112 182
FBpp0190406 RRM 198 266
FBpp0190406 RRM 358 428

Links

Other RRM family RBPs
Other Drosophila persimilis RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL008164 Aedes aegypti AAEL008164 N 0.705
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.736
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.745
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.722
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.745
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.736
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.714
AGAP000965 Anopheles gambiae AGAP000965 I 0.853
AGAP001883 Anopheles gambiae AGAP001883 N 0.709
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.900
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.722
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.701
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.745
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.788
Bm1_43995 Brugia malayi Bm1_43995 N 0.701
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.745
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.736
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.736
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.745
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.722
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.788
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.736
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.745
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.745
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.731
CpipJ_CPIJ008385 Culex pipiens CpipJ_CPIJ008385 N 0.700
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.844
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.854
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.844
CPIJ008385 Culex quinquefasciatus CPIJ008385 N 0.700
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.854
elavl3 Danio rerio ENSDARG00000014420 I 0.731
elavl4 Danio rerio ENSDARG00000045639 I 0.738
elavl2 Danio rerio ENSDARG00000040732 I 0.741
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.797
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.745
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.745
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.736
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.722
GF14992 Drosophila ananassae FBgn0092017 I 0.977
GG24901 Drosophila erecta FBgn0117030 I 0.977
GG12756 Drosophila erecta FBgn0105043 N 0.716
GH13638 Drosophila grimshawi FBgn0121114 I 0.995
Rbp9 Drosophila melanogaster FBgn0010263 D 0.995
GI11879 Drosophila mojavensis FBgn0134637 I 0.977
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.977
GM19036 Drosophila sechellia FBgn0173939 N 0.716
GM18380 Drosophila sechellia FBgn0173287 I 0.977
GD16475 Drosophila simulans FBgn0188089 N 0.716
GJ13991 Drosophila virilis FBgn0201209 I 0.977
GK14865 Drosophila willistoni FBgn0216870 I 0.977
GE18193 Drosophila yakuba FBgn0235624 I 0.977
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.736
ELAVL2 Equus caballus ENSECAG00000020142 I 0.736
LOC100051268 Equus caballus ENSECAG00000022284 I 0.745
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.745
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.736
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.745
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.731
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.741
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.736
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.722
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.745
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.736
187316 Helobdella robusta 187316 N 0.730
185541 Helobdella robusta 185541 I 0.725
ELAVL2 Homo sapiens ENSG00000107105 D 0.736
ELAVL4 Homo sapiens ENSG00000162374 D 0.745
ELAVL3 Homo sapiens ENSG00000196361 I 0.722
ISCW010302 Ixodes scapularis ISCW010302 N 0.706
LOAG_11702 Loa loa LOAG_11702 N 0.706
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.801
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.722
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.745
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.736
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.745
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.736
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.745
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.714
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.742
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.745
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.736
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.745
Elavl4 Mus musculus ENSMUSG00000028546 I 0.745
Elavl3 Mus musculus ENSMUSG00000003410 I 0.722
Elavl2 Mus musculus ENSMUSG00000008489 I 0.736
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.701
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.731
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.745
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.910
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.736
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.745
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.736
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.745
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.741
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.741
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.724
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.745
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.722
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.736
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.745
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.745
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.736
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.745
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.722
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.736
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.736
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.745
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.722
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.736
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.745
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.736
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.722
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.722
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.745
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.741
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.744
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.731
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.745
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.703
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.736
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.741
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.721
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.736
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.722
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.745
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.736
AAI70539 Xenopus laevis AAI70539 I 0.736
CAA59430 Xenopus laevis CAA59430 I 0.728
CBF67567 Xenopus laevis CBF67567 I 0.741
CBU92440 Xenopus laevis CBU92440 I 0.741
Q91584 Xenopus laevis Q91584 I 0.714
AAI69769 Xenopus laevis AAI69769 I 0.714
AAH99348 Xenopus laevis AAH99348 I 0.741
AAH94189 Xenopus laevis AAH94189 I 0.736
AAA96945 Xenopus laevis AAA96945 I 0.741
AAA96944 Xenopus laevis AAA96944 I 0.714
AAA96943 Xenopus laevis AAA96943 I 0.732
Q91903 Xenopus laevis Q91903 I 0.732
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.741
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.710