Glyma16g02220.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma16g02220.1 T52873_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma16g02220.1 RRM 26 93

Links

Other RRM family RBPs
Other Glycine max RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.706
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.809
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.779
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.899
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.000
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.706
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.000
BRADI2G61350 Brachypodium distachyon BRADI2G61350 N 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.721
PK14266.1 Cannabis sativa PK14266.1 I 0.941
PK21213.1 Cannabis sativa PK21213.1 I 0.838
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.868
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.706
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.706
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.706
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 1.000
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.838
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.853
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.706
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.971
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.765
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
MDP0000744398 Malus x domestica MDP0000744398 I 0.971
MDP0000548950 Malus x domestica MDP0000548950 I 0.971
MDP0000181802 Malus x domestica MDP0000181802 N 0.000
MDP0000488395 Malus x domestica MDP0000488395 I 0.956
MDP0000271231 Malus x domestica MDP0000271231 N 0.000
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.956
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.824
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.735
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.735
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.956
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.000
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.853
CU179634_3 Medicago truncatula CU179634_3 I 0.824
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.706
mgf002440m Mimulus guttatus mgf002440m N 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.853
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.735
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.000
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.735
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.000
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.735
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.824
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.824
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.824
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.971
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.809
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.971
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.000
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.706
ppa009716m Prunus persica ppa009716m I 0.824
ppa016222m Prunus persica ppa016222m I 0.956
30170.m013735 Ricinus communis 30170.m013735 I 0.750
30076.m004440 Ricinus communis 30076.m004440 I 0.971
29983.m003293 Ricinus communis 29983.m003293 I 0.721
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.765
SB03G041530 Sorghum bicolor Sb03g041530 I 0.735
SB03G046430 Sorghum bicolor Sb03g046430 N 0.000
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.706
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.765
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.735
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.721