PTBP1 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000013587 T37509_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.720
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.720
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000017963 RRM 75 131
ENSGACP00000017963 RRM 186 252
ENSGACP00000017963 RRM 364 430
ENSGACP00000017963 RRM 506 546

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.816
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.780
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.778
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.776
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.755
ptbp1a Danio rerio ENSDARG00000019362 I 0.751
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.742
ptbp1b Danio rerio ENSDARG00000031907 I 0.742
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.738
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.738
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.735
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.734
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.732
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.730
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.730
AAH45068 Xenopus laevis AAH45068 I 0.728
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.727
PTBP1 Homo sapiens ENSG00000011304 D 0.727
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.727
PTBP1 Equus caballus ENSECAG00000018845 I 0.727
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.727
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.727
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.727
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.727
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.727
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.727
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.723
AAF00041 Xenopus laevis AAF00041 I 0.720
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.719