CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTBP1
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPCAG00000007614
T40351_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.840
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.840
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.840
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000007147
RRM
61
116
VHVRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVSYYTS
ENSPCAP00000007147
RRM
185
251
IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSAQHAKLSLDGQNIYNACCT
ENSPCAP00000007147
RRM
364
430
LLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVR
ENSPCAP00000007147
RRM
508
545
XFKFFQKDRKMALIQMGSVEEAIQALIELHNHDLGENH
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
53 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.920
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.863
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.859
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.855
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.852
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.852
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.851
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.844
PTBP1
Equus caballus
ENSECAG00000018845
I
0.844
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.840
PTBP1
Homo sapiens
ENSG00000011304
D
0.840
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.840
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.832
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.825
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.824
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.824
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.824
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.824
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.816
AAF00041
Xenopus laevis
AAF00041
I
0.809
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.809
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.804
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.800
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.789
AAH45068
Xenopus laevis
AAH45068
I
0.786
PTBP1
Gasterosteus aculeatus
ENSGACG00000013587
I
0.780
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.755
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.751
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.746
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.743
AAH97557
Xenopus laevis
AAH97557
I
0.738
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.730
ROD1
Danio rerio
ENSDARG00000043757
I
0.729
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.729
ROD1
Equus caballus
ENSECAG00000021243
I
0.729
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.728
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.727
Rod1
Mus musculus
ENSMUSG00000028382
I
0.727
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.723
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.723
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.723
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.723
ROD1
Homo sapiens
ENSG00000119314
I
0.719
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.719
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.719
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.719
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.719
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.719
ROD1
Bos taurus
ENSBTAG00000016750
I
0.718
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.715
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.711
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.711
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.703