PTBP1 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000014019 T40219_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.809
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.809
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000017575 RRM 63 119
ENSORLP00000017575 RRM 176 242
ENSORLP00000017575 RRM 353 419
ENSORLP00000017575 RRM 470 534

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.883
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.837
ptbp1b Danio rerio ENSDARG00000031907 I 0.832
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.821
ptbp1a Danio rerio ENSDARG00000019362 I 0.817
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.816
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.815
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.812
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.812
PTBP1 Homo sapiens ENSG00000011304 D 0.809
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.809
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.809
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.809
AAH45068 Xenopus laevis AAH45068 I 0.805
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.805
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.805
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.805
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.805
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.802
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.801
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.801
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.797
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.797
AAF00041 Xenopus laevis AAF00041 I 0.794
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.793
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.793
PTBP1 Equus caballus ENSECAG00000018845 I 0.793
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.773
ROD1 Danio rerio ENSDARG00000043757 I 0.766
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.763
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.762
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.762
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.759
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.755
ROD1 Equus caballus ENSECAG00000021243 I 0.754
ROD1 Sus scrofa ENSSSCG00000005466 I 0.754
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.743
Rod1 Mus musculus ENSMUSG00000028382 I 0.743
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.743
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.743
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.743
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.742
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.739
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.739
ROD1 Homo sapiens ENSG00000119314 I 0.739
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.739
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.739
ROD1 Bos taurus ENSBTAG00000016750 I 0.738
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.735
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.735
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.734
AAH97557 Xenopus laevis AAH97557 I 0.732
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.717
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.716
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.712
ROD1 Canis familiaris ENSCAFG00000003015 I 0.712
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.711
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.704
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.704
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.704
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.700
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.700
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.700
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.700
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.700
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.700
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.700
PTBP2 Homo sapiens ENSG00000117569 I 0.700
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.700
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.700
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.700
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.700
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.700
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.700
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.700