PTBP1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000011360 T42319_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.809
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.809
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000028673 RRM 76 133
ENSTRUP00000028673 RRM 201 267
ENSTRUP00000028673 RRM 385 451
ENSTRUP00000028673 RRM 502 566
ENSTRUP00000028674 RRM 77 135
ENSTRUP00000028674 RRM 202 268

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.930
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.915
ptbp1a Danio rerio ENSDARG00000019362 I 0.887
ptbp1b Danio rerio ENSDARG00000031907 I 0.864
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.825
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.825
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.821
AAH45068 Xenopus laevis AAH45068 I 0.818
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.817
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.817
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.813
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.813
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.813
PTBP1 Homo sapiens ENSG00000011304 D 0.809
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.809
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.809
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.809
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.809
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.805
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.805
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.805
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.802
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.802
PTBP1 Equus caballus ENSECAG00000018845 I 0.798
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.798
AAF00041 Xenopus laevis AAF00041 I 0.795
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.791
ROD1 Danio rerio ENSDARG00000043757 I 0.786
ROD1 Equus caballus ENSECAG00000021243 I 0.774
ROD1 Sus scrofa ENSSSCG00000005466 I 0.774
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.767
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.764
Rod1 Mus musculus ENSMUSG00000028382 I 0.764
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.764
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.764
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.764
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.764
ROD1 Bos taurus ENSBTAG00000016750 I 0.763
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.760
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.760
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.760
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.760
ROD1 Homo sapiens ENSG00000119314 I 0.760
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.760
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.759
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.759
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.759
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.755
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.755
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.754
PTBP2 Tupaia belangeri ENSTBEG00000010797 N 0.754
PTBP2 Homo sapiens ENSG00000117569 I 0.754
PTBP2 Procavia capensis ENSPCAG00000010292 N 0.754
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.754
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.754
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.748
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.735
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.733
AAH97557 Xenopus laevis AAH97557 I 0.733
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.729
ROD1 Canis familiaris ENSCAFG00000003015 I 0.729
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.729
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.729
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.728
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.725
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.725
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.725
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.725
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.725
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.725
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.725
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.725
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.725
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.725
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.725
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.725
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.725
LOC100057336 Equus caballus ENSECAG00000015783 I 0.722
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.722
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.721
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.717
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.705
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.701