PTBP1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000010168 T42296_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.775
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.775
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000025601 RRM 54 109
ENSTRUP00000025601 RRM 165 231
ENSTRUP00000025601 RRM 344 411
ENSTRUP00000025601 RRM 462 526
ENSTRUP00000025602 RRM 51 106
ENSTRUP00000025602 RRM 162 228
ENSTRUP00000025602 RRM 319 386
ENSTRUP00000025602 RRM 437 501

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.883
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.818
ptbp1a Danio rerio ENSDARG00000019362 I 0.806
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.802
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.801
ptbp1b Danio rerio ENSDARG00000031907 I 0.798
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.794
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.790
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.790
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.790
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.789
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.786
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.786
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.786
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.785
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.782
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.782
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.782
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.782
PTBP1 Homo sapiens ENSG00000011304 D 0.782
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.781
AAH45068 Xenopus laevis AAH45068 I 0.779
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.778
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.774
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.771
PTBP1 Equus caballus ENSECAG00000018845 I 0.770
AAF00041 Xenopus laevis AAF00041 I 0.770
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.754
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.739
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.739
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.735
ROD1 Equus caballus ENSECAG00000021243 I 0.734
ROD1 Sus scrofa ENSSSCG00000005466 I 0.734
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.733
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.732
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.732
ROD1 Danio rerio ENSDARG00000043757 I 0.730
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.727
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.724
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.724
Rod1 Mus musculus ENSMUSG00000028382 I 0.724
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.724
ROD1 Bos taurus ENSBTAG00000016750 I 0.723
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.720
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.720
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.720
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.720
ROD1 Homo sapiens ENSG00000119314 I 0.720
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.720
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.716
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.716
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.709
AAH97557 Xenopus laevis AAH97557 I 0.704
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.703
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.702
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.702
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.702
ROD1 Canis familiaris ENSCAFG00000003015 I 0.700