CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTBP1
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000011430
T40191_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.815
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.815
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.815
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000014312
RRM
78
135
VHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEFGSEECAQTMVSYYSSVT
ENSORLP00000014312
RRM
203
269
VIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAMTAQHAKLSLDGQNIYNACCT
ENSORLP00000014312
RRM
388
457
LLVSNLNPESLKSVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDGTQAQLSMSHLNGQRLHGRAIR
ENSORLP00000014312
RRM
508
572
LHLSNIPPSVMEDDLRRLFASTGATVKAFKFFQKDRKMALIQMGSVEEAIECLIEFHNHDLGENH
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.935
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.915
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.900
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.854
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.831
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.831
AAH45068
Xenopus laevis
AAH45068
I
0.824
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.823
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.823
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.823
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.819
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.819
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.819
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.816
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.815
PTBP1
Homo sapiens
ENSG00000011304
D
0.815
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.815
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.815
AAF00041
Xenopus laevis
AAF00041
I
0.812
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.812
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.812
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.808
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.804
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.804
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.801
PTBP1
Equus caballus
ENSECAG00000018845
I
0.800
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.789
ROD1
Danio rerio
ENSDARG00000043757
I
0.781
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.778
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.773
ROD1
Equus caballus
ENSECAG00000021243
I
0.773
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.770
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.766
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.765
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.762
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.762
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.762
Rod1
Mus musculus
ENSMUSG00000028382
I
0.762
ROD1
Bos taurus
ENSBTAG00000016750
I
0.762
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.762
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.759
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.759
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.759
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.759
ROD1
Homo sapiens
ENSG00000119314
I
0.759
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.759
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.758
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.758
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.758
AAH97557
Xenopus laevis
AAH97557
I
0.747
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.747
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.746
PTBP1
Gasterosteus aculeatus
ENSGACG00000013587
I
0.742
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.736
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.732
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.732
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.732
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.728
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.728
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.728
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.728
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.728
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.728
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.728
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.728
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.728
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.728
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.728
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.728
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.728
PTBP2
Homo sapiens
ENSG00000117569
I
0.728
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.728
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.728
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.728
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.725
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.725
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.725
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.720
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.720
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.707