Ame_R015370 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R015370 T55620_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.762
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.762
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.762
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.742
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R015370 RRM 8 80
Ame_R015370 RRM 102 171

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

190 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.897
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.897
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.897
LOC100066794 Equus caballus ENSECAG00000023237 I 0.897
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.890
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.890
LOC781499 Bos taurus ENSBTAG00000021580 I 0.890
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.890
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.890
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.890
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.890
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.890
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.890
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.890
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.890
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.890
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.890
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.890
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.890
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.890
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.890
HNRNPA3 Homo sapiens ENSG00000170144 I 0.890
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.890
Gm8991 Mus musculus ENSMUSG00000059179 I 0.890
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.890
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.890
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.884
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.883
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.883
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.862
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.856
P51968 Xenopus laevis P51968 I 0.855
AAA49949 Xenopus laevis AAA49949 I 0.855
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.849
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.848
CBF67578 Xenopus laevis CBF67578 I 0.844
P51992 Xenopus laevis P51992 I 0.844
CBU92451 Xenopus laevis CBU92451 I 0.844
AAI69881 Xenopus laevis AAI69881 I 0.844
AAA49950 Xenopus laevis AAA49950 I 0.844
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.842
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.837
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.836
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.821
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.815
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.814
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.810
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.808
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.808
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.807
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.801
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.800
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.800
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.800
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.800
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.800
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.800
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.793
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.793
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.793
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.793
HNRNPA1 Homo sapiens ENSG00000135486 D 0.793
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.793
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.793
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.793
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.793
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.793
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.793
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.793
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.793
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.793
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.793
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.793
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.793
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.793
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.793
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.793
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.793
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.793
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.793
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.786
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.786
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.786
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.786
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.781
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.779
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.779
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.779
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.779
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.779
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.779
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.779
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.779
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.779
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.772
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.772
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.772
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.772
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.772
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.772
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.772
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.772
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.772
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.772
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.766
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.766
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.766
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.766
AAH72090 Xenopus laevis AAH72090 I 0.759
CBU92546 Xenopus laevis CBU92546 I 0.759
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.759
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.759
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.759
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.759
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.759
CBF67672 Xenopus laevis CBF67672 I 0.759
AAH45260 Xenopus laevis AAH45260 I 0.759
LOC785445 Bos taurus ENSBTAG00000025621 I 0.753
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.752
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.752
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.752
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.752
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.748
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.747
P17130 Xenopus laevis P17130 I 0.745
AAA49741 Xenopus laevis AAA49741 I 0.745
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.745
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.745
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.745
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.745
AAA49742 Xenopus laevis AAA49742 I 0.745
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.745
CBU92428 Xenopus laevis CBU92428 I 0.745
CBF67555 Xenopus laevis CBF67555 I 0.745
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.745
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.745
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.743
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.741
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.741
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.740
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.740
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.739
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.733
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.733
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.733
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.733
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.728
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.726
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.726
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.726
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.721
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.721
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.721
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.719
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.719
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.719
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.719
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.719
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.719
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.719
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.717
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.717
LOC100054206 Equus caballus ENSECAG00000006699 I 0.714
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.714
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.714
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.712
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.710
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.710
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.710
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.710
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.709
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.706
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.706
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.705
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.705
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.705
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.705
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.705
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.705
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.703
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.703
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.701
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.701
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.701