BDE_estExt_fgenesh1_pg.C_380037 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BDE_estExt_fgenesh1_pg.C_380037 T49080_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.729
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.725
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.725
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.725
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BDE_estExt_fgenesh1_pg.C_380037 RRM 14 84
BDE_estExt_fgenesh1_pg.C_380037 RRM 102 171
BDE_estExt_fgenesh1_pg.C_380037 RRM 195 264
BDE_estExt_fgenesh1_pg.C_380037 RRM 298 367

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ISCW014211 Ixodes scapularis ISCW014211 I 0.790
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.787
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.784
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.784
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.784
PHUM617090 Pediculus humanus PHUM617090 I 0.777
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.773
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.773
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.773
GH21052 Drosophila grimshawi FBgn0128514 I 0.770
AAEL010318 Aedes aegypti AAEL010318 I 0.766
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.762
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.762
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.755
GJ21671 Drosophila virilis FBgn0208790 I 0.755
AGAP011092 Anopheles gambiae AGAP011092 I 0.752
GI18654 Drosophila mojavensis FBgn0141393 I 0.752
AAH52100 Xenopus laevis AAH52100 I 0.750
AAA60936 Xenopus laevis AAA60936 I 0.750
P20965 Xenopus laevis P20965 I 0.750
CAA40721 Xenopus laevis CAA40721 I 0.750
GL11548 Drosophila persimilis FBgn0149157 I 0.748
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.748
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.744
AAH72110 Xenopus laevis AAH72110 I 0.743
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.743
AAI08463 Xenopus laevis AAI08463 I 0.743
Q6IP09 Xenopus laevis Q6IP09 I 0.743
GK19652 Drosophila willistoni FBgn0221650 I 0.741
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.739
pabpc1a Danio rerio ENSDARG00000017219 I 0.736
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.736
AAH73435 Xenopus laevis AAH73435 I 0.736
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.736
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.736
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.736
GG21846 Drosophila erecta FBgn0114024 I 0.734
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.734
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.734
GF12652 Drosophila ananassae FBgn0089688 I 0.734
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.734
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.733
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.733
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.732
PABPC4 Gallus gallus ENSGALG00000003800 I 0.732
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.732
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.732
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.732
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.732
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.732
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.732
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.732
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.732
PABPC4 Homo sapiens ENSG00000090621 D 0.732
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.732
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.732
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.732
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.732
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.732
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.732
LOC100054235 Equus caballus ENSECAG00000009396 I 0.732
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.730
GE11925 Drosophila yakuba FBgn0229707 I 0.730
pabpc1b Danio rerio ENSDARG00000021140 I 0.730
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.730
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.729
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.729
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.729
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.729
Gm10110 Mus musculus ENSMUSG00000062093 I 0.729
pabpc4 Danio rerio ENSDARG00000059259 I 0.729
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.729
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.729
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.729
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.729
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.729
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.729
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.727
GD11341 Drosophila simulans FBgn0183090 I 0.727
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.725
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.725
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.725
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.725
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.725
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.725
PABPC1 Homo sapiens ENSG00000070756 D 0.725
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.725
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.725
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.725
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.725
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.725
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.725
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.725
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.725
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.725
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.725
pAbp Drosophila melanogaster FBgn0261619 D 0.723
GM21847 Drosophila sechellia FBgn0176724 I 0.723
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.723
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.722
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.718
LOAG_01058 Loa loa LOAG_01058 I 0.715
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.715
Bm1_16080 Brugia malayi Bm1_16080 I 0.715
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.715
Bm1_06880 Brugia malayi Bm1_06880 I 0.712
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.711
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.711
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.711
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.710
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.708
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.705
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.704
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.704
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.704
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.701
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.701
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.701
PABPC1L Gallus gallus ENSGALG00000004123 I 0.701