XM_002864318.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.8__1388__AT5G54900.1 T44597_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__1388__AT5G54900.1 RRM 66 136
fgenesh2_kg.8__1388__AT5G54900.1 RRM 160 231
fgenesh2_kg.8__1388__AT5G54900.1 RRM 266 330

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.962
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.808
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.774
MDP0000614064 Malus x domestica MDP0000614064 N 0.760
MDP0000223369 Malus x domestica MDP0000223369 N 0.750
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.745
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.745
mgf010468m Mimulus guttatus mgf010468m I 0.740
ppa006577m Prunus persica ppa006577m I 0.740
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.736
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.736
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.736
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.736
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.736
29666.m001436 Ricinus communis 29666.m001436 I 0.731
29842.m003612 Ricinus communis 29842.m003612 N 0.726
mgf014417m Mimulus guttatus mgf014417m N 0.726
SB01G016170 Sorghum bicolor Sb01g016170 N 0.721
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.721
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.707
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.707
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.707
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.702
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.702