cassava35906.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava35906.valid.m1 T49334_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35906.valid.m1 RRM 76 146
cassava35906.valid.m1 RRM 169 240
cassava35906.valid.m1 RRM 276 340

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.938
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.938
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.938
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.938
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.938
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.894
29666.m001436 Ricinus communis 29666.m001436 I 0.875
MDP0000614064 Malus x domestica MDP0000614064 N 0.812
MDP0000223369 Malus x domestica MDP0000223369 N 0.808
ppa006577m Prunus persica ppa006577m I 0.803
mgf010468m Mimulus guttatus mgf010468m I 0.774
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.760
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.760
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.760
mgf014417m Mimulus guttatus mgf014417m N 0.760
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.755
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.755
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.750
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.750
29842.m003612 Ricinus communis 29842.m003612 N 0.750
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.745
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.745
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.745
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.745
PK10695.1 Cannabis sativa PK10695.1 I 0.740
MDP0000294628 Malus x domestica MDP0000294628 I 0.740
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.736
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.726
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.716
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.716
ppa006617m Prunus persica ppa006617m N 0.716
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.712
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.712
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.712
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.707
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.707
SB01G016170 Sorghum bicolor Sb01g016170 N 0.707
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.707
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.707
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.707
SB01G045570 Sorghum bicolor Sb01g045570 I 0.702
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.702
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.702