ATRBP45A (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G54900-TAIR-G T32848_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G54900.1-P RRM 62 132
AT5G54900.1-P RRM 156 227
AT5G54900.1-P RRM 262 326

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.962
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.812
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.774
MDP0000614064 Malus x domestica MDP0000614064 N 0.760
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.755
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.755
MDP0000223369 Malus x domestica MDP0000223369 N 0.750
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.745
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.745
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.745
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.745
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.745
29842.m003612 Ricinus communis 29842.m003612 N 0.740
ppa006577m Prunus persica ppa006577m I 0.740
mgf010468m Mimulus guttatus mgf010468m I 0.736
mgf014417m Mimulus guttatus mgf014417m N 0.726
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.721
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.721
SB01G016170 Sorghum bicolor Sb01g016170 N 0.716
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.712
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.712
29666.m001436 Ricinus communis 29666.m001436 I 0.712
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.707
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.707
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.707
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.702
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.702
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.702