A9PGI8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s45000 T45447_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s45000.1 RRM 69 139
POPTR_0001s45000.1 RRM 162 233
POPTR_0001s45000.1 RRM 269 333

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.894
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.880
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.880
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.880
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.880
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.880
29666.m001436 Ricinus communis 29666.m001436 I 0.837
MDP0000614064 Malus x domestica MDP0000614064 N 0.808
MDP0000223369 Malus x domestica MDP0000223369 N 0.803
ppa006577m Prunus persica ppa006577m I 0.798
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.774
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.769
mgf010468m Mimulus guttatus mgf010468m I 0.764
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.755
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.750
mgf014417m Mimulus guttatus mgf014417m N 0.750
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.750
29842.m003612 Ricinus communis 29842.m003612 N 0.750
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.745
MDP0000294628 Malus x domestica MDP0000294628 I 0.740
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.740
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.736
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.736
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.736
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.736
PK10695.1 Cannabis sativa PK10695.1 I 0.731
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.731
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.716
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.712
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.712
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.712
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.712
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.712
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.707
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.707
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.707
ppa006617m Prunus persica ppa006617m N 0.707
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.707
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.702