ATRBP45C (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT4G27000-TAIR-G T32790_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT4G27000.1-P RRM 82 151
AT4G27000.1-P RRM 175 246
AT4G27000.1-P RRM 280 344

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.923
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.812
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.808
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.774
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.764
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.764
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.764
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.764
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.764
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.760
MDP0000614064 Malus x domestica MDP0000614064 N 0.760
29666.m001436 Ricinus communis 29666.m001436 I 0.755
ppa006577m Prunus persica ppa006577m I 0.755
mgf010468m Mimulus guttatus mgf010468m I 0.750
MDP0000223369 Malus x domestica MDP0000223369 N 0.750
mgf014417m Mimulus guttatus mgf014417m N 0.726
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.725
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.720
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.716
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.715
29842.m003612 Ricinus communis 29842.m003612 N 0.710
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.710
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.710
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.707
PK10695.1 Cannabis sativa PK10695.1 I 0.707
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.705
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.705
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.702
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.700