XM_002867483.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_701590.1 T46142_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_701590.1 RRM 83 152
scaffold_701590.1 RRM 176 247
scaffold_701590.1 RRM 281 345

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.923
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.779
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.779
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.779
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.779
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.779
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.774
29666.m001436 Ricinus communis 29666.m001436 I 0.774
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.774
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.769
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.760
ppa006577m Prunus persica ppa006577m I 0.760
mgf010468m Mimulus guttatus mgf010468m I 0.750
MDP0000223369 Malus x domestica MDP0000223369 N 0.740
MDP0000614064 Malus x domestica MDP0000614064 N 0.740
mgf014417m Mimulus guttatus mgf014417m N 0.731
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.716
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.712
PK10695.1 Cannabis sativa PK10695.1 I 0.712
29842.m003612 Ricinus communis 29842.m003612 N 0.710
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.710
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.707
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.707
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.707
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.705
MDP0000294628 Malus x domestica MDP0000294628 I 0.702
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.702
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.700
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.700
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.700