B9H1C9_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0004s01690 T45492_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s01690.1 RRM 79 148
POPTR_0004s01690.1 RRM 171 242
POPTR_0004s01690.1 RRM 278 342

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29842.m003612 Ricinus communis 29842.m003612 N 0.879
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.836
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.836
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.816
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.816
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.807
PK10695.1 Cannabis sativa PK10695.1 I 0.803
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.802
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.793
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.793
ppa006617m Prunus persica ppa006617m N 0.793
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.783
MDP0000294628 Malus x domestica MDP0000294628 I 0.779
mgf014417m Mimulus guttatus mgf014417m N 0.774
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.773
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.763
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.749
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.745
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.745
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.745
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.745
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.745
mgf010468m Mimulus guttatus mgf010468m I 0.745
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.744
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.736
ppa006577m Prunus persica ppa006577m I 0.736
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.736
29666.m001436 Ricinus communis 29666.m001436 I 0.731
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.729
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.726
MDP0000614064 Malus x domestica MDP0000614064 N 0.726
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.725
MDP0000223369 Malus x domestica MDP0000223369 N 0.721
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.721
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.715
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.707
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.705