29666.m001436 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29666.m001436 T48671_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
29666.m001436 RRM 68 138
29666.m001436 RRM 161 232
29666.m001436 RRM 268 332

Links

Other RRM family RBPs
Other Ricinus communis RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.894
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.894
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.894
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.894
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.894
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.875
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.837
ppa006577m Prunus persica ppa006577m I 0.788
MDP0000614064 Malus x domestica MDP0000614064 N 0.788
MDP0000223369 Malus x domestica MDP0000223369 N 0.784
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.774
mgf014417m Mimulus guttatus mgf014417m N 0.764
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.760
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.755
mgf010468m Mimulus guttatus mgf010468m I 0.755
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.750
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.750
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.750
MDP0000294628 Malus x domestica MDP0000294628 I 0.745
29842.m003612 Ricinus communis 29842.m003612 N 0.745
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.745
PK10695.1 Cannabis sativa PK10695.1 I 0.740
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.740
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.731
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.731
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.731
ppa006617m Prunus persica ppa006617m N 0.726
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.721
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.721
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.721
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.716
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.716
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.712
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.707
SB01G016170 Sorghum bicolor Sb01g016170 N 0.702
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.702
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.702
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.702