chr2.LjT48A12.20.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr2.LjT48A12.20.nd T55844_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjT48A12.20.nd RRM 8 76
chr2.LjT48A12.20.nd RRM 108 178

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.964
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.943
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.943
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.936
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.936
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.936
PK25912.1 Cannabis sativa PK25912.1 N 0.914
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.907
ppa004834m Prunus persica ppa004834m N 0.907
ppa005122m Prunus persica ppa005122m N 0.907
MDP0000204698 Malus x domestica MDP0000204698 N 0.900
27613.m000635 Ricinus communis 27613.m000635 N 0.900
MDP0000609551 Malus x domestica MDP0000609551 N 0.900
MDP0000188788 Malus x domestica MDP0000188788 N 0.900
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.893
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.893
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.886
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.879
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.879
mgf012147m Mimulus guttatus mgf012147m N 0.871
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.871
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.864
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.858
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.857
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.857
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.857
ppa005119m Prunus persica ppa005119m N 0.857
ppa005132m Prunus persica ppa005132m N 0.857
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.850
29608.m000212 Ricinus communis 29608.m000212 N 0.850
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.850
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.850
30048.m000319 Ricinus communis 30048.m000319 N 0.850
MDP0000320618 Malus x domestica MDP0000320618 N 0.850
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.850
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.850
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.850
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.850
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.850
MDP0000907782 Malus x domestica MDP0000907782 N 0.843
mgf009385m Mimulus guttatus mgf009385m N 0.843
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.843
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.843
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.836
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.836
MDP0000642684 Malus x domestica MDP0000642684 N 0.836
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.836
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.829
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.821
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.821
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.821
PK13457.1 Cannabis sativa PK13457.1 N 0.814
mgf009486m Mimulus guttatus mgf009486m N 0.814
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.814
mgf004139m Mimulus guttatus mgf004139m N 0.807
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.807
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.800
SB02G005620 Sorghum bicolor Sb02g005620 N 0.800
SB02G005670 Sorghum bicolor Sb02g005670 N 0.800
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.793
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.793
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.786
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.779
SB02G037690 Sorghum bicolor Sb02g037690 N 0.779
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.771
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.771
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.764
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.764
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.764
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.757
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.757
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.721
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.721
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.721
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.714
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.714
SB05G025410 Sorghum bicolor Sb05g025410 N 0.707
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.707
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.707
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.700
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.700