186191 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 186191 T48590_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.754
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.725
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.725
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.725
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.725
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.725
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.725
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.725
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
186191 RRM 9 80
186191 RRM 164 228

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP011637 Anopheles gambiae AGAP011637 I 0.783
AAEL014167 Aedes aegypti AAEL014167 I 0.783
AAEL002980 Aedes aegypti AAEL002980 I 0.783
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.775
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.768
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.768
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.763
LOC100050830 Equus caballus ENSECAG00000018407 I 0.763
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.763
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.763
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.763
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.763
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.763
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.763
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.763
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.763
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.763
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.763
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.763
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.763
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.763
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.763
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.763
SNRPB2 Homo sapiens ENSG00000125870 I 0.763
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.763
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.763
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.763
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.763
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.763
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.763
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.763
GK25839 Drosophila willistoni FBgn0227798 I 0.761
snf Drosophila mojavensis FBgn0069598 I 0.761
GJ16850 Drosophila virilis FBgn0204029 I 0.761
GH24608 Drosophila grimshawi FBgn0132064 I 0.761
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.755
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.755
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.755
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.755
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.755
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.755
GG18748 Drosophila erecta FBgn0110957 I 0.754
GF21334 Drosophila ananassae FBgn0098336 I 0.754
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.754
GL14287 Drosophila persimilis FBgn0151892 I 0.754
snf Drosophila melanogaster FBgn0003449 D 0.754
GM12396 Drosophila sechellia FBgn0167333 I 0.754
GE16390 Drosophila yakuba FBgn0233919 I 0.754
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.752
AAH72799 Xenopus laevis AAH72799 I 0.748
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.748
AAH84107 Xenopus laevis AAH84107 I 0.746
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.745
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.745
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.741
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.741
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.739
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.737
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.737
SNRPA Oryzias latipes ENSORLG00000006536 I 0.737
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.737
snrpb2 Danio rerio ENSDARG00000039424 I 0.737
snrpa Danio rerio ENSDARG00000018890 I 0.732
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.732
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.732
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.730
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.727
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.727
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.725
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.725
SNRPA Canis familiaris ENSCAFG00000005091 I 0.725
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.725
SNRPA Sus scrofa ENSSSCG00000002998 I 0.725
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.725
Snrpa Mus musculus ENSMUSG00000061479 I 0.725
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.725
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.725
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.725
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.725
SNRPA Homo sapiens ENSG00000077312 D 0.725
SNRPA Felis catus ENSFCAG00000016209 I 0.725
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.725
SNRPA Procavia capensis ENSPCAG00000012325 I 0.725
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.725
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.725
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.725
LOC100068274 Equus caballus ENSECAG00000013141 I 0.725
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.725
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.725
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.725
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.725
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.723
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.723
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.717
AAH44979 Xenopus laevis AAH44979 I 0.717
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.717
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.717
CAA41021 Xenopus laevis CAA41021 I 0.717
P45429 Xenopus laevis P45429 I 0.717
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.717
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.717
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.712
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.710
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.708
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.708
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.708
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.703
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.701