SNRPB2 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000001085 T36865_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.761
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.746
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.746
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.746
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.746
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.746
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.746
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.746
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000000877 RRM 9 80
ENSETEP00000000877 RRM 153 217

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.942
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.942
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.942
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.942
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.942
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.942
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.942
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.942
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.942
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.942
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.942
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.942
LOC100050830 Equus caballus ENSECAG00000018407 I 0.942
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.942
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.942
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.942
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.942
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.942
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.942
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.942
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.942
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.942
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.942
SNRPB2 Homo sapiens ENSG00000125870 I 0.942
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.942
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.935
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.935
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.935
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.935
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.921
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.921
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.921
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.913
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.906
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.906
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.863
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.862
AAH72799 Xenopus laevis AAH72799 I 0.856
AAH84107 Xenopus laevis AAH84107 I 0.841
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.835
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.804
snrpb2 Danio rerio ENSDARG00000039424 I 0.797
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.790
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.790
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.784
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.783
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.777
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.775
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.775
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.775
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.768
GK25839 Drosophila willistoni FBgn0227798 I 0.768
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.768
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.768
GH24608 Drosophila grimshawi FBgn0132064 I 0.768
AAEL002980 Aedes aegypti AAEL002980 I 0.768
AAEL014167 Aedes aegypti AAEL014167 I 0.768
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.768
GJ16850 Drosophila virilis FBgn0204029 I 0.768
snf Drosophila mojavensis FBgn0069598 I 0.768
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.763
GE16390 Drosophila yakuba FBgn0233919 I 0.761
GG18748 Drosophila erecta FBgn0110957 I 0.761
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.761
snf Drosophila melanogaster FBgn0003449 D 0.761
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.761
GF21334 Drosophila ananassae FBgn0098336 I 0.761
GL14287 Drosophila persimilis FBgn0151892 I 0.761
GM12396 Drosophila sechellia FBgn0167333 I 0.761
SNRPA Procavia capensis ENSPCAG00000012325 I 0.754
Snrpa Mus musculus ENSMUSG00000061479 I 0.754
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.754
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.754
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.746
AGAP011637 Anopheles gambiae AGAP011637 I 0.746
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.746
SNRPA Canis familiaris ENSCAFG00000005091 I 0.746
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.746
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.746
SNRPA Felis catus ENSFCAG00000016209 I 0.746
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.746
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.746
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.746
SNRPA Homo sapiens ENSG00000077312 D 0.746
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.746
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.746
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.746
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.746
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.746
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.746
LOC100068274 Equus caballus ENSECAG00000013141 I 0.746
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.746
SNRPA Sus scrofa ENSSSCG00000002998 I 0.746
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.746
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.746
snrpa Danio rerio ENSDARG00000018890 I 0.739
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.732
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.732
AAH44979 Xenopus laevis AAH44979 I 0.732
P45429 Xenopus laevis P45429 I 0.732
CAA41021 Xenopus laevis CAA41021 I 0.732
SNRPA Oryzias latipes ENSORLG00000006536 I 0.732
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.732
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.732
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.725
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.725
186191 Helobdella robusta 186191 I 0.717
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.717
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.710
SNRPA Echinops telfairi ENSETEG00000019205 I 0.710
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.703