SNRPB2 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000019682 T37572_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.754
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.754
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.754
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.754
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.754
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.754
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.754
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.754
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000026011 RRM 9 80
ENSGACP00000026011 RRM 146 210
ENSGACP00000026013 RRM 9 80
ENSGACP00000026013 RRM 152 216

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
snrpb2 Danio rerio ENSDARG00000039424 I 0.920
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.912
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.912
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.905
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.835
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.835
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.835
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.820
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.820
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.820
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.820
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.820
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.820
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.820
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.820
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.820
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.820
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.820
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.820
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.820
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.820
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.820
SNRPB2 Homo sapiens ENSG00000125870 I 0.820
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.820
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.820
LOC100050830 Equus caballus ENSECAG00000018407 I 0.820
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.820
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.820
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.820
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.820
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.820
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.820
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.813
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.813
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.813
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.813
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.810
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.806
AAH72799 Xenopus laevis AAH72799 I 0.799
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.799
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.797
AAH84107 Xenopus laevis AAH84107 I 0.790
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.788
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.784
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.781
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.777
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.775
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.770
GF21334 Drosophila ananassae FBgn0098336 I 0.768
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.768
GL14287 Drosophila persimilis FBgn0151892 I 0.768
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.768
GJ16850 Drosophila virilis FBgn0204029 I 0.761
GH24608 Drosophila grimshawi FBgn0132064 I 0.761
GK25839 Drosophila willistoni FBgn0227798 I 0.761
AAEL014167 Aedes aegypti AAEL014167 I 0.761
snf Drosophila mojavensis FBgn0069598 I 0.761
AAEL002980 Aedes aegypti AAEL002980 I 0.761
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.761
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.759
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.759
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.754
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.754
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.754
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.754
SNRPA Homo sapiens ENSG00000077312 D 0.754
SNRPA Felis catus ENSFCAG00000016209 I 0.754
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.754
LOC100068274 Equus caballus ENSECAG00000013141 I 0.754
SNRPA Canis familiaris ENSCAFG00000005091 I 0.754
GG18748 Drosophila erecta FBgn0110957 I 0.754
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.754
SNRPA Procavia capensis ENSPCAG00000012325 I 0.754
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.754
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.754
SNRPA Sus scrofa ENSSSCG00000002998 I 0.754
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.754
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.754
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.754
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.754
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.754
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.754
Snrpa Mus musculus ENSMUSG00000061479 I 0.754
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.754
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.754
snf Drosophila melanogaster FBgn0003449 D 0.754
GM12396 Drosophila sechellia FBgn0167333 I 0.754
GE16390 Drosophila yakuba FBgn0233919 I 0.754
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.752
SNRPA Oryzias latipes ENSORLG00000006536 I 0.752
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.746
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.746
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.746
AGAP011637 Anopheles gambiae AGAP011637 I 0.746
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.739
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.739
snrpa Danio rerio ENSDARG00000018890 I 0.739
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.739
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.739
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.739
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.737
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.734
P45429 Xenopus laevis P45429 I 0.732
AAH44979 Xenopus laevis AAH44979 I 0.732
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.732
CAA41021 Xenopus laevis CAA41021 I 0.732
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.725
SNRPA Echinops telfairi ENSETEG00000019205 I 0.717
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.715
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.710
105398 Helobdella robusta 105398 I 0.708
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.708
186191 Helobdella robusta 186191 I 0.708