AAH84107 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH84107 T59571_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.797
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.797
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.797
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.797
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.797
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.797
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.797
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.797
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH84107 RRM 9 80
AAH84107 RRM 151 216

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH72799 Xenopus laevis AAH72799 I 0.971
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.957
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.892
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.892
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.892
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.892
LOC100050830 Equus caballus ENSECAG00000018407 I 0.885
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.885
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.885
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.885
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.885
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.885
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.885
SNRPB2 Homo sapiens ENSG00000125870 I 0.885
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.885
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.885
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.885
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.885
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.885
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.885
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.885
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.885
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.885
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.885
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.885
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.885
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.885
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.885
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.885
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.885
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.885
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.878
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.878
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.878
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.863
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.855
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.849
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.841
snrpb2 Danio rerio ENSDARG00000039424 I 0.819
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.819
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.813
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.812
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.812
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.804
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.804
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.804
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.804
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.804
SNRPA Procavia capensis ENSPCAG00000012325 I 0.804
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.804
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.797
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.797
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.797
SNRPA Sus scrofa ENSSSCG00000002998 I 0.797
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.797
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.797
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.797
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.797
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.797
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.797
LOC100068274 Equus caballus ENSECAG00000013141 I 0.797
SNRPA Felis catus ENSFCAG00000016209 I 0.797
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.797
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.797
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.797
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.797
SNRPA Canis familiaris ENSCAFG00000005091 I 0.797
SNRPA Homo sapiens ENSG00000077312 D 0.797
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.797
Snrpa Mus musculus ENSMUSG00000061479 I 0.797
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.797
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.797
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.797
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.791
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.790
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.790
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.790
CAA41021 Xenopus laevis CAA41021 I 0.783
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.783
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.783
AAEL002980 Aedes aegypti AAEL002980 I 0.783
P45429 Xenopus laevis P45429 I 0.783
AAEL014167 Aedes aegypti AAEL014167 I 0.783
snrpa Danio rerio ENSDARG00000018890 I 0.783
AAH44979 Xenopus laevis AAH44979 I 0.783
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.783
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.783
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.777
AGAP011637 Anopheles gambiae AGAP011637 I 0.775
snf Drosophila mojavensis FBgn0069598 I 0.775
GJ16850 Drosophila virilis FBgn0204029 I 0.775
GH24608 Drosophila grimshawi FBgn0132064 I 0.775
GK25839 Drosophila willistoni FBgn0227798 I 0.775
GM12396 Drosophila sechellia FBgn0167333 I 0.768
GE16390 Drosophila yakuba FBgn0233919 I 0.768
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.768
GL14287 Drosophila persimilis FBgn0151892 I 0.768
GF21334 Drosophila ananassae FBgn0098336 I 0.768
GG18748 Drosophila erecta FBgn0110957 I 0.768
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.768
snf Drosophila melanogaster FBgn0003449 D 0.768
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.768
SNRPA Echinops telfairi ENSETEG00000019205 I 0.761
SNRPA Oryzias latipes ENSORLG00000006536 I 0.761
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.761
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.761
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.754
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.754
186191 Helobdella robusta 186191 I 0.746
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.739
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.727
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.725
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.725
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.717
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.710