CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH84107
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH84107
T59571_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.797
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.797
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.797
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.797
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.797
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.797
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.797
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.797
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.768
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH84107
RRM
9
80
VYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQGFVIFKELSSATNALRQLQGFPFYSKPMR
AAH84107
RRM
151
216
LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNETEAGSARDALQGFKITPSNAM
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH72799
Xenopus laevis
AAH72799
I
0.971
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.957
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.892
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.892
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.892
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.892
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.885
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.885
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.885
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.885
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.885
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.885
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.885
SNRPB2
Homo sapiens
ENSG00000125870
I
0.885
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.885
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.885
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.885
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.885
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.885
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.885
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.885
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.885
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.885
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.885
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.885
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.885
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.885
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.885
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.885
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.885
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.885
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.878
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.878
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.878
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.863
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.855
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.849
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.841
snrpb2
Danio rerio
ENSDARG00000039424
I
0.819
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.819
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.813
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.812
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.812
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.804
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.804
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.804
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.804
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.804
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.804
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.804
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.797
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.797
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.797
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.797
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.797
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.797
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.797
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.797
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.797
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.797
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.797
SNRPA
Felis catus
ENSFCAG00000016209
I
0.797
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.797
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.797
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.797
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.797
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.797
SNRPA
Homo sapiens
ENSG00000077312
D
0.797
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.797
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.797
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.797
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.797
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.797
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.791
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.790
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.790
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.790
CAA41021
Xenopus laevis
CAA41021
I
0.783
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.783
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.783
AAEL002980
Aedes aegypti
AAEL002980
I
0.783
P45429
Xenopus laevis
P45429
I
0.783
AAEL014167
Aedes aegypti
AAEL014167
I
0.783
snrpa
Danio rerio
ENSDARG00000018890
I
0.783
AAH44979
Xenopus laevis
AAH44979
I
0.783
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.783
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.783
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.777
AGAP011637
Anopheles gambiae
AGAP011637
I
0.775
snf
Drosophila mojavensis
FBgn0069598
I
0.775
GJ16850
Drosophila virilis
FBgn0204029
I
0.775
GH24608
Drosophila grimshawi
FBgn0132064
I
0.775
GK25839
Drosophila willistoni
FBgn0227798
I
0.775
GM12396
Drosophila sechellia
FBgn0167333
I
0.768
GE16390
Drosophila yakuba
FBgn0233919
I
0.768
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.768
GL14287
Drosophila persimilis
FBgn0151892
I
0.768
GF21334
Drosophila ananassae
FBgn0098336
I
0.768
GG18748
Drosophila erecta
FBgn0110957
I
0.768
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.768
snf
Drosophila melanogaster
FBgn0003449
D
0.768
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.768
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.761
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.761
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.761
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.761
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.754
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.754
186191
Helobdella robusta
186191
I
0.746
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.739
SNRPB2
Dasypus novemcinctus
ENSDNOG00000014137
N
0.727
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.725
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.725
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.717
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.710