CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRPB2
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000009060
T42278_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.768
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.761
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.761
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.761
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.761
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.761
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.761
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.761
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.761
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000022769
RRM
17
88
IYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTAATNALRQLQGFPFYNKPMR
ENSTRUP00000022769
RRM
155
219
LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESDVQAGVAKDALQGFRITATCA
ENSTRUP00000022770
RRM
9
80
IYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTAATNALRQLQGFPFYNKPMR
ENSTRUP00000022770
RRM
160
224
LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESDVQAGVAKDALQGFRITATCA
ENSTRUP00000022771
RRM
9
80
IYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTAATNALRQLQGFPFYNKPMR
ENSTRUP00000022771
RRM
151
215
LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESDVQAGVAKDALQGFRITATCA
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
113 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.978
snrpb2
Danio rerio
ENSDARG00000039424
I
0.927
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.920
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.912
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.835
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.835
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.835
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.835
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.835
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.835
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.835
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.835
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.835
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.835
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.835
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.835
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.835
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.835
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.835
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.835
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.835
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.835
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.835
SNRPB2
Homo sapiens
ENSG00000125870
I
0.835
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.835
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.835
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.835
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.835
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.835
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.835
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.835
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.835
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.827
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.827
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.827
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.825
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.820
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.813
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.813
AAH72799
Xenopus laevis
AAH72799
I
0.813
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.804
AAH84107
Xenopus laevis
AAH84107
I
0.804
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.799
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.796
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.790
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.788
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.788
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.788
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.788
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.783
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.777
GJ16850
Drosophila virilis
FBgn0204029
I
0.775
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.775
GH24608
Drosophila grimshawi
FBgn0132064
I
0.775
GK25839
Drosophila willistoni
FBgn0227798
I
0.775
snf
Drosophila mojavensis
FBgn0069598
I
0.775
snf
Drosophila melanogaster
FBgn0003449
D
0.768
GM12396
Drosophila sechellia
FBgn0167333
I
0.768
AAEL002980
Aedes aegypti
AAEL002980
I
0.768
GL14287
Drosophila persimilis
FBgn0151892
I
0.768
GG18748
Drosophila erecta
FBgn0110957
I
0.768
GF21334
Drosophila ananassae
FBgn0098336
I
0.768
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.768
GE16390
Drosophila yakuba
FBgn0233919
I
0.768
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.768
AAEL014167
Aedes aegypti
AAEL014167
I
0.768
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.763
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.761
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.761
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.761
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.761
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.761
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.761
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.761
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.761
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.761
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.761
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.761
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.761
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.761
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.761
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.761
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.761
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.761
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.761
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.761
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.761
SNRPA
Homo sapiens
ENSG00000077312
D
0.761
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.761
SNRPA
Felis catus
ENSFCAG00000016209
I
0.761
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.761
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.761
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.759
AGAP011637
Anopheles gambiae
AGAP011637
I
0.754
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.746
snrpa
Danio rerio
ENSDARG00000018890
I
0.746
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.746
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.746
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.746
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.745
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.741
CAA41021
Xenopus laevis
CAA41021
I
0.739
AAH44979
Xenopus laevis
AAH44979
I
0.739
P45429
Xenopus laevis
P45429
I
0.739
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.739
186191
Helobdella robusta
186191
I
0.737
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.732
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.730
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.725
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.717
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.715
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.710