LOC100407601 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000023308 T35704_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.790
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.768
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.768
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.768
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.768
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.768
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.768
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.768
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000041814 RRM 9 80
ENSCJAP00000041814 RRM 153 216

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.957
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.957
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.957
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.957
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.957
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.957
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.957
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.957
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.957
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.957
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.957
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.957
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.957
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.957
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.957
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.957
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.957
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.957
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.957
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.957
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.957
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.957
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.957
LOC100050830 Equus caballus ENSECAG00000018407 I 0.957
SNRPB2 Homo sapiens ENSG00000125870 I 0.957
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.957
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.957
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.950
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.935
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.935
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.935
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.935
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.928
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.921
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.913
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.884
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.878
AAH72799 Xenopus laevis AAH72799 I 0.871
AAH84107 Xenopus laevis AAH84107 I 0.855
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.849
snrpb2 Danio rerio ENSDARG00000039424 I 0.832
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.826
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.825
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.825
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.818
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.810
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.806
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.803
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.803
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.803
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.796
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.791
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.790
snf Drosophila mojavensis FBgn0069598 I 0.790
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.790
AAEL014167 Aedes aegypti AAEL014167 I 0.790
AAEL002980 Aedes aegypti AAEL002980 I 0.790
GG18748 Drosophila erecta FBgn0110957 I 0.790
GK25839 Drosophila willistoni FBgn0227798 I 0.790
GE16390 Drosophila yakuba FBgn0233919 I 0.790
GJ16850 Drosophila virilis FBgn0204029 I 0.790
GM12396 Drosophila sechellia FBgn0167333 I 0.790
GH24608 Drosophila grimshawi FBgn0132064 I 0.790
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.790
snf Drosophila melanogaster FBgn0003449 D 0.790
GF21334 Drosophila ananassae FBgn0098336 I 0.783
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.783
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.783
GL14287 Drosophila persimilis FBgn0151892 I 0.783
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.777
Snrpa Mus musculus ENSMUSG00000061479 I 0.775
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.768
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.768
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.768
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.768
SNRPA Procavia capensis ENSPCAG00000012325 I 0.768
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.768
AGAP011637 Anopheles gambiae AGAP011637 I 0.768
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.768
SNRPA Canis familiaris ENSCAFG00000005091 I 0.768
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.768
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.768
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.768
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.768
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.768
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.768
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.768
SNRPA Felis catus ENSFCAG00000016209 I 0.768
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.768
LOC100068274 Equus caballus ENSECAG00000013141 I 0.768
SNRPA Homo sapiens ENSG00000077312 D 0.768
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.768
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.768
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.768
SNRPA Sus scrofa ENSSSCG00000002998 I 0.768
SNRPA Oryzias latipes ENSORLG00000006536 I 0.766
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.766
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.761
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.759
snrpa Danio rerio ENSDARG00000018890 I 0.754
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.754
AAH44979 Xenopus laevis AAH44979 I 0.754
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.754
CAA41021 Xenopus laevis CAA41021 I 0.754
P45429 Xenopus laevis P45429 I 0.754
186191 Helobdella robusta 186191 I 0.752
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.746
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.743
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.739
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.732
SNRPA Echinops telfairi ENSETEG00000019205 I 0.732
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.725
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.723
105398 Helobdella robusta 105398 I 0.706