CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100407601
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000023308
T35704_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.790
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.768
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.768
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.768
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.768
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.768
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.768
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.768
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.768
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000041814
RRM
9
80
IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPML
ENSCJAP00000041814
RRM
153
216
LFLNNLPEETNEMMLSMLFNQFPGFKEVQLVPGRHDIAFVEFENDGQAGAARDALQGFKITPAH
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
114 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.957
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.957
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.957
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.957
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.957
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.957
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.957
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.957
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.957
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.957
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.957
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.957
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.957
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.957
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.957
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.957
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.957
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.957
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.957
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.957
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.957
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.957
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.957
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.957
SNRPB2
Homo sapiens
ENSG00000125870
I
0.957
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.957
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.957
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.950
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.935
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.935
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.935
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.935
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.928
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.921
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.913
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.884
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.878
AAH72799
Xenopus laevis
AAH72799
I
0.871
AAH84107
Xenopus laevis
AAH84107
I
0.855
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.849
snrpb2
Danio rerio
ENSDARG00000039424
I
0.832
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.826
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.825
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.825
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.818
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.810
SNRPB2
Dasypus novemcinctus
ENSDNOG00000014137
N
0.806
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.803
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.803
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.803
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.796
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.791
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.790
snf
Drosophila mojavensis
FBgn0069598
I
0.790
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.790
AAEL014167
Aedes aegypti
AAEL014167
I
0.790
AAEL002980
Aedes aegypti
AAEL002980
I
0.790
GG18748
Drosophila erecta
FBgn0110957
I
0.790
GK25839
Drosophila willistoni
FBgn0227798
I
0.790
GE16390
Drosophila yakuba
FBgn0233919
I
0.790
GJ16850
Drosophila virilis
FBgn0204029
I
0.790
GM12396
Drosophila sechellia
FBgn0167333
I
0.790
GH24608
Drosophila grimshawi
FBgn0132064
I
0.790
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.790
snf
Drosophila melanogaster
FBgn0003449
D
0.790
GF21334
Drosophila ananassae
FBgn0098336
I
0.783
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.783
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.783
GL14287
Drosophila persimilis
FBgn0151892
I
0.783
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.777
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.775
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.768
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.768
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.768
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.768
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.768
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.768
AGAP011637
Anopheles gambiae
AGAP011637
I
0.768
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.768
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.768
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.768
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.768
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.768
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.768
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.768
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.768
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.768
SNRPA
Felis catus
ENSFCAG00000016209
I
0.768
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.768
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.768
SNRPA
Homo sapiens
ENSG00000077312
D
0.768
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.768
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.768
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.768
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.768
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.766
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.766
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.761
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.759
snrpa
Danio rerio
ENSDARG00000018890
I
0.754
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.754
AAH44979
Xenopus laevis
AAH44979
I
0.754
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.754
CAA41021
Xenopus laevis
CAA41021
I
0.754
P45429
Xenopus laevis
P45429
I
0.754
186191
Helobdella robusta
186191
I
0.752
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.746
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.743
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.739
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.732
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.732
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.725
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.723
105398
Helobdella robusta
105398
I
0.706