snrpb2 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000003550 T42829_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.791
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.791
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.791
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.791
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.791
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.791
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.791
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.791
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.784
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000007674 RRM 9 80
ENSXETP00000007674 RRM 151 217

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH72799 Xenopus laevis AAH72799 I 0.986
AAH84107 Xenopus laevis AAH84107 I 0.957
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.928
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.928
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.928
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.921
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.921
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.921
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.921
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.921
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.921
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.921
LOC100050830 Equus caballus ENSECAG00000018407 I 0.921
SNRPB2 Homo sapiens ENSG00000125870 I 0.921
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.921
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.921
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.921
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.921
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.921
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.921
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.921
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.921
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.921
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.921
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.921
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.921
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.921
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.921
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.921
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.921
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.921
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.914
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.914
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.914
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.899
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.885
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.878
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.863
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.849
snrpb2 Danio rerio ENSDARG00000039424 I 0.835
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.835
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.827
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.827
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.827
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.820
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.820
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.813
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.813
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.813
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.813
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.813
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.806
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.806
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.806
AAEL002980 Aedes aegypti AAEL002980 I 0.799
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.799
SNRPA Procavia capensis ENSPCAG00000012325 I 0.799
AAEL014167 Aedes aegypti AAEL014167 I 0.799
GK25839 Drosophila willistoni FBgn0227798 I 0.791
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.791
GJ16850 Drosophila virilis FBgn0204029 I 0.791
Snrpa Mus musculus ENSMUSG00000061479 I 0.791
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.791
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.791
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.791
SNRPA Sus scrofa ENSSSCG00000002998 I 0.791
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.791
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.791
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.791
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.791
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.791
AGAP011637 Anopheles gambiae AGAP011637 I 0.791
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.791
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.791
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.791
snf Drosophila mojavensis FBgn0069598 I 0.791
SNRPA Canis familiaris ENSCAFG00000005091 I 0.791
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.791
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.791
LOC100068274 Equus caballus ENSECAG00000013141 I 0.791
SNRPA Homo sapiens ENSG00000077312 D 0.791
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.791
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.791
SNRPA Felis catus ENSFCAG00000016209 I 0.791
GH24608 Drosophila grimshawi FBgn0132064 I 0.791
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.791
GE16390 Drosophila yakuba FBgn0233919 I 0.784
GL14287 Drosophila persimilis FBgn0151892 I 0.784
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.784
GF21334 Drosophila ananassae FBgn0098336 I 0.784
GG18748 Drosophila erecta FBgn0110957 I 0.784
GM12396 Drosophila sechellia FBgn0167333 I 0.784
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.784
snf Drosophila melanogaster FBgn0003449 D 0.784
CAA41021 Xenopus laevis CAA41021 I 0.777
P45429 Xenopus laevis P45429 I 0.777
snrpa Danio rerio ENSDARG00000018890 I 0.777
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.777
AAH44979 Xenopus laevis AAH44979 I 0.777
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.777
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.777
SNRPA Oryzias latipes ENSORLG00000006536 I 0.770
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.763
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.763
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.763
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.755
SNRPA Echinops telfairi ENSETEG00000019205 I 0.755
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.755
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.748
186191 Helobdella robusta 186191 I 0.748
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.741
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.734
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.734
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.719
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.712