SNRPB2 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000019421 T40262_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.761
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.739
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.739
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.739
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.739
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.739
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.739
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.739
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000024175 RRM 16 87
ENSORLP00000024175 RRM 155 219
ENSORLP00000024176 RRM 9 80
ENSORLP00000024176 RRM 145 209

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
snrpb2 Danio rerio ENSDARG00000039424 I 0.927
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.920
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.920
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.912
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.827
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.827
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.827
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.827
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.827
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.827
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.827
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.827
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.827
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.827
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.827
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.827
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.827
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.827
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.827
LOC100050830 Equus caballus ENSECAG00000018407 I 0.827
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.827
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.827
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.827
SNRPB2 Homo sapiens ENSG00000125870 I 0.827
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.827
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.827
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.827
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.827
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.827
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.827
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.827
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.827
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.820
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.820
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.820
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.820
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.818
AAH72799 Xenopus laevis AAH72799 I 0.813
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.806
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.806
AAH84107 Xenopus laevis AAH84107 I 0.804
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.791
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.790
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.783
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.775
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.775
GF21334 Drosophila ananassae FBgn0098336 I 0.775
GL14287 Drosophila persimilis FBgn0151892 I 0.775
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.774
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.774
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.774
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.774
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.770
AAEL014167 Aedes aegypti AAEL014167 I 0.768
AAEL002980 Aedes aegypti AAEL002980 I 0.768
GH24608 Drosophila grimshawi FBgn0132064 I 0.768
snf Drosophila mojavensis FBgn0069598 I 0.768
GK25839 Drosophila willistoni FBgn0227798 I 0.768
GJ16850 Drosophila virilis FBgn0204029 I 0.768
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.766
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.763
snf Drosophila melanogaster FBgn0003449 D 0.761
GG18748 Drosophila erecta FBgn0110957 I 0.761
GE16390 Drosophila yakuba FBgn0233919 I 0.761
GM12396 Drosophila sechellia FBgn0167333 I 0.761
Snrpa Mus musculus ENSMUSG00000061479 I 0.746
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.746
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.746
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.746
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.739
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.739
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.739
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.739
SNRPA Canis familiaris ENSCAFG00000005091 I 0.739
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.739
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.739
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.739
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.739
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.739
SNRPA Procavia capensis ENSPCAG00000012325 I 0.739
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.739
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.739
SNRPA Homo sapiens ENSG00000077312 D 0.739
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.739
SNRPA Sus scrofa ENSSSCG00000002998 I 0.739
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.739
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.739
AGAP011637 Anopheles gambiae AGAP011637 I 0.739
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.739
LOC100068274 Equus caballus ENSECAG00000013141 I 0.739
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.739
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.739
SNRPA Felis catus ENSFCAG00000016209 I 0.739
SNRPA Oryzias latipes ENSORLG00000006536 I 0.737
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.737
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.734
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.732
snrpa Danio rerio ENSDARG00000018890 I 0.725
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.725
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.725
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.725
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.725
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.723
186191 Helobdella robusta 186191 I 0.723
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.723
P45429 Xenopus laevis P45429 I 0.717
CAA41021 Xenopus laevis CAA41021 I 0.717
AAH44979 Xenopus laevis AAH44979 I 0.717
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.710
SNRPA Echinops telfairi ENSETEG00000019205 I 0.710
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.703