CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRPB2
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000019421
T40262_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.761
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.739
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.739
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.739
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.739
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.739
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.739
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.739
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.739
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000024175
RRM
16
87
IYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQLQGFPFYNKPMR
ENSORLP00000024175
RRM
155
219
LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCA
ENSORLP00000024176
RRM
9
80
IYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQLQGFPFYNKPMR
ENSORLP00000024176
RRM
145
209
LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCA
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
snrpb2
Danio rerio
ENSDARG00000039424
I
0.927
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.920
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.920
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.912
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.827
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.827
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.827
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.827
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.827
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.827
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.827
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.827
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.827
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.827
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.827
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.827
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.827
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.827
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.827
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.827
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.827
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.827
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.827
SNRPB2
Homo sapiens
ENSG00000125870
I
0.827
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.827
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.827
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.827
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.827
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.827
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.827
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.827
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.827
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.820
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.820
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.820
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.820
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.818
AAH72799
Xenopus laevis
AAH72799
I
0.813
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.806
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.806
AAH84107
Xenopus laevis
AAH84107
I
0.804
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.791
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.790
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.783
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.775
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.775
GF21334
Drosophila ananassae
FBgn0098336
I
0.775
GL14287
Drosophila persimilis
FBgn0151892
I
0.775
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.774
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.774
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.774
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.774
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.770
AAEL014167
Aedes aegypti
AAEL014167
I
0.768
AAEL002980
Aedes aegypti
AAEL002980
I
0.768
GH24608
Drosophila grimshawi
FBgn0132064
I
0.768
snf
Drosophila mojavensis
FBgn0069598
I
0.768
GK25839
Drosophila willistoni
FBgn0227798
I
0.768
GJ16850
Drosophila virilis
FBgn0204029
I
0.768
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.766
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.763
snf
Drosophila melanogaster
FBgn0003449
D
0.761
GG18748
Drosophila erecta
FBgn0110957
I
0.761
GE16390
Drosophila yakuba
FBgn0233919
I
0.761
GM12396
Drosophila sechellia
FBgn0167333
I
0.761
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.746
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.746
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.746
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.746
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.739
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.739
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.739
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.739
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.739
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.739
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.739
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.739
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.739
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.739
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.739
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.739
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.739
SNRPA
Homo sapiens
ENSG00000077312
D
0.739
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.739
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.739
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.739
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.739
AGAP011637
Anopheles gambiae
AGAP011637
I
0.739
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.739
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.739
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.739
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.739
SNRPA
Felis catus
ENSFCAG00000016209
I
0.739
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.737
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.737
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.734
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.732
snrpa
Danio rerio
ENSDARG00000018890
I
0.725
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.725
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.725
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.725
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.725
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.723
186191
Helobdella robusta
186191
I
0.723
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.723
P45429
Xenopus laevis
P45429
I
0.717
CAA41021
Xenopus laevis
CAA41021
I
0.717
AAH44979
Xenopus laevis
AAH44979
I
0.717
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.710
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.710
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.703