32497 (Aureococcus anophagefferens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 32497 T48797_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
32497 RRM 18 91

Links

Other RRM family RBPs
Other Aureococcus anophagefferens RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.800
s_454910 Phytophthora sojae s_454910 N 0.800
PITG_10282 Phytophthora infestans PITG_10282 N 0.800
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.787
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.784
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.784
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.784
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.784
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.784
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.773
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.770
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.770
ppa013405m Prunus persica ppa013405m N 0.770
PK21780.1 Cannabis sativa PK21780.1 N 0.770
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.770
ppa013407m Prunus persica ppa013407m N 0.770
ISCW024082 Ixodes scapularis ISCW024082 N 0.770
MDP0000185506 Malus x domestica MDP0000185506 N 0.770
SB01G003790 Sorghum bicolor Sb01g003790 N 0.770
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.770
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.770
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.770
29868.m000351 Ricinus communis 29868.m000351 N 0.770
PHUM617060 Pediculus humanus PHUM617060 N 0.770
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.757
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.757
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.757
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.747
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.747
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.747
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.743
AGAP002780 Anopheles gambiae AGAP002780 N 0.743
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.743
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.743
AAEL005909 Aedes aegypti AAEL005909 N 0.743
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.743
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.733
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.733
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.733
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.733
mgf016428m Mimulus guttatus mgf016428m N 0.733
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.730
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.730
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.730
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.730
MDP0000916880 Malus x domestica MDP0000916880 N 0.730
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.730
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.730
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.730
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.720
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.716
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.716
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.716
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.716
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.716
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.716
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.716
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.716
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.716
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.716
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.716
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.716
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.716
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.716
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.716
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.716
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.716
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.716
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.716
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.716
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.716
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.716
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.716
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.716
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.716
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.716
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.716
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.716
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.716
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.716
sf3b14 Danio rerio ENSDARG00000009753 N 0.716
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.716
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.716
SF3B14 Gallus gallus ENSGALG00000016501 N 0.716
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.716
AC008073.5 Homo sapiens ENSG00000115128 N 0.716
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.716
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.716
LOC100056247 Equus caballus ENSECAG00000015618 N 0.716
GJ12004 Drosophila virilis FBgn0199256 N 0.707
GD13137 Drosophila simulans FBgn0184859 N 0.707
GK17258 Drosophila willistoni FBgn0219257 N 0.707
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.707
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.707
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.707
GM13852 Drosophila sechellia FBgn0168783 N 0.707
GE20495 Drosophila yakuba FBgn0068445 N 0.707
GL22529 Drosophila persimilis FBgn0160121 N 0.707
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.707
CG13298 Drosophila melanogaster FBgn0035692 N 0.707
GG14070 Drosophila erecta FBgn0106332 N 0.707
GF10910 Drosophila ananassae FBgn0087950 N 0.707
GI13232 Drosophila mojavensis FBgn0135989 N 0.707
GH16287 Drosophila grimshawi FBgn0123758 N 0.707
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.703
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.703
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.703
AAH57709 Xenopus laevis AAH57709 N 0.703
Smp_032060 Schistosoma mansoni Smp_032060 N 0.703
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.703
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.703