cassava39454.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava39454.m1 T49373_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava39454.m1 RRM 18 85

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.926
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.926
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.912
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.899
PK15672.1 Cannabis sativa PK15672.1 I 0.899
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.899
MDP0000134468 Malus x domestica MDP0000134468 I 0.897
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.897
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.897
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.884
ppa018926m Prunus persica ppa018926m I 0.884
ppa019392m Prunus persica ppa019392m I 0.884
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.884
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.870
MDP0000233609 Malus x domestica MDP0000233609 I 0.868
29908.m006046 Ricinus communis 29908.m006046 I 0.868
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.841
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.841
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.838
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.826
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.824
mgf017214m Mimulus guttatus mgf017214m I 0.824
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.824
PK21213.1 Cannabis sativa PK21213.1 I 0.824
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.824
CU179634_3 Medicago truncatula CU179634_3 I 0.809
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.809
ppa009964m Prunus persica ppa009964m I 0.809
ppa009716m Prunus persica ppa009716m I 0.809
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.809
MDP0000138486 Malus x domestica MDP0000138486 I 0.809
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.794
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.794
30076.m004440 Ricinus communis 30076.m004440 I 0.794
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.794
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.794
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.794
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.794
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.794
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.783
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.779
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.779
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.779
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.779
MDP0000744398 Malus x domestica MDP0000744398 I 0.779
MDP0000488395 Malus x domestica MDP0000488395 I 0.779
MDP0000548950 Malus x domestica MDP0000548950 I 0.779
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.765
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.765
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.765
PK14266.1 Cannabis sativa PK14266.1 I 0.765
ppa016222m Prunus persica ppa016222m I 0.765
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.750
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.750
MDP0000184420 Malus x domestica MDP0000184420 I 0.750
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.739
MDP0000857317 Malus x domestica MDP0000857317 I 0.739
MDP0000118777 Malus x domestica MDP0000118777 I 0.739
ppa018603m Prunus persica ppa018603m I 0.739
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.735
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.735
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.735
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.735
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.735
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.725
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.721
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.721
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.721
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.721
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.721
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.706
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.706
30170.m013735 Ricinus communis 30170.m013735 I 0.706
29923.m000811 Ricinus communis 29923.m000811 I 0.706
SB04G030020 Sorghum bicolor Sb04g030020 I 0.706
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.706