Medtr5g073010 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr5g073010 T54554_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr5g073010.1 RRM 18 85

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.956
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.956
PK15672.1 Cannabis sativa PK15672.1 I 0.942
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.941
MDP0000134468 Malus x domestica MDP0000134468 I 0.926
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.926
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.926
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.913
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.913
ppa019392m Prunus persica ppa019392m I 0.899
ppa018926m Prunus persica ppa018926m I 0.899
29908.m006046 Ricinus communis 29908.m006046 I 0.897
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.884
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.884
MDP0000233609 Malus x domestica MDP0000233609 I 0.882
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.870
mgf017214m Mimulus guttatus mgf017214m I 0.868
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.855
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.855
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.853
ppa009964m Prunus persica ppa009964m I 0.853
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.853
PK21213.1 Cannabis sativa PK21213.1 I 0.853
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.841
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.838
MDP0000138486 Malus x domestica MDP0000138486 I 0.838
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.824
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.824
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.809
ppa009716m Prunus persica ppa009716m I 0.809
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.809
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.809
CU179634_3 Medicago truncatula CU179634_3 I 0.809
30076.m004440 Ricinus communis 30076.m004440 I 0.794
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.794
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.794
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.794
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.794
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.783
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.779
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.779
MDP0000488395 Malus x domestica MDP0000488395 I 0.779
MDP0000548950 Malus x domestica MDP0000548950 I 0.779
MDP0000284454 Malus x domestica MDP0000284454 I 0.779
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.779
MDP0000744398 Malus x domestica MDP0000744398 I 0.779
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.768
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.768
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.768
PK14266.1 Cannabis sativa PK14266.1 I 0.765
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.765
ppa016222m Prunus persica ppa016222m I 0.765
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.765
MDP0000184420 Malus x domestica MDP0000184420 I 0.765
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.765
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.754
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.754
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.750
MDP0000118777 Malus x domestica MDP0000118777 I 0.739
MDP0000857317 Malus x domestica MDP0000857317 I 0.739
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.739
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.739
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.735
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.735
ppa018603m Prunus persica ppa018603m I 0.725
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.725
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.725
SB04G030020 Sorghum bicolor Sb04g030020 I 0.721
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.721
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.721
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.721
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.721
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.721
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.706
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.706
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.706
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.706
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.706
30170.m013735 Ricinus communis 30170.m013735 I 0.706
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.706
mgf016660m Mimulus guttatus mgf016660m I 0.706
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.706