Glyma08g13130.1 (Glycine max)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Glyma08g13130.1 T62396_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma08g13130.1 YTH 507 597

Links

Other YTH family RBPs
Other Glycine max RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.989
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.901
PK23716.1 Cannabis sativa PK23716.1 N 0.901
MDP0000129009 Malus x domestica MDP0000129009 N 0.868
MDP0000718677 Malus x domestica MDP0000718677 N 0.868
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.868
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.857
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.857
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.857
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.857
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.857
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.846
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.846
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.846
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.846
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.846
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.846
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.846
SB01G008170 Sorghum bicolor Sb01g008170 N 0.846
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.846
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.835
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.835
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.835
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.835
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.835
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.835
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.835
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.835
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.835
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.835
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.835
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.835
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.835
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.835
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.835
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.824
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.824
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
mgf013935m Mimulus guttatus mgf013935m N 0.824
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.824
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.813
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.813
mgf009938m Mimulus guttatus mgf009938m N 0.802
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.802
mgf013853m Mimulus guttatus mgf013853m N 0.802
MDP0000124048 Malus x domestica MDP0000124048 N 0.802
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.802
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.791
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.791
29950.m001140 Ricinus communis 29950.m001140 N 0.780
MDP0000488588 Malus x domestica MDP0000488588 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.769
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.758
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.758
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.758
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.758
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.758
SB01G005500 Sorghum bicolor Sb01g005500 N 0.758
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.758
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.758
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
SB02G003990 Sorghum bicolor Sb02g003990 N 0.747
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.736
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.736
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.725
29929.m004643 Ricinus communis 29929.m004643 N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
MDP0000552419 Malus x domestica MDP0000552419 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000171737 Malus x domestica MDP0000171737 N 0.714
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.714
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.714
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.714
mgf001716m Mimulus guttatus mgf001716m N 0.703
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.703
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
ppa002483m Prunus persica ppa002483m N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
ppa018635m Prunus persica ppa018635m N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703