Medtr4g136900 (Medicago truncatula)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Medtr4g136900 T62453_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g136900.1 YTH 471 561

Links

Other YTH family RBPs
Other Medicago truncatula RBPs

136 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.912
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.901
PK23716.1 Cannabis sativa PK23716.1 N 0.868
MDP0000129009 Malus x domestica MDP0000129009 N 0.868
MDP0000718677 Malus x domestica MDP0000718677 N 0.868
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.835
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.824
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.824
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.824
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.824
mgf013935m Mimulus guttatus mgf013935m N 0.824
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.824
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.824
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.824
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.824
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.813
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.813
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.813
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.813
SB01G008170 Sorghum bicolor Sb01g008170 N 0.813
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.813
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.813
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.813
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.813
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.813
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.813
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.813
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.813
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.813
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.813
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.813
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.813
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.813
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.813
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.813
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.813
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.813
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.813
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.813
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.813
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.813
29950.m001140 Ricinus communis 29950.m001140 N 0.802
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.802
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.802
mgf013853m Mimulus guttatus mgf013853m N 0.802
mgf009938m Mimulus guttatus mgf009938m N 0.802
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.802
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.802
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.802
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.791
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.791
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.791
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.791
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.791
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.780
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.780
SB01G005500 Sorghum bicolor Sb01g005500 N 0.780
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.780
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.769
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.769
MDP0000124048 Malus x domestica MDP0000124048 N 0.769
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.769
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.769
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.769
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.769
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
SB02G003990 Sorghum bicolor Sb02g003990 N 0.758
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.758
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.736
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.736
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
ppa018635m Prunus persica ppa018635m N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.725
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
MDP0000552419 Malus x domestica MDP0000552419 N 0.725
29929.m004643 Ricinus communis 29929.m004643 N 0.725
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.714
PK17832.1 Cannabis sativa PK17832.1 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.703
PK02315.1 Cannabis sativa PK02315.1 N 0.703
ppa003664m Prunus persica ppa003664m N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703