SB02G003990 (Sorghum bicolor)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Sb02g003990 T62259_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb02g003990.1 YTH 454 544

Links

Other YTH family RBPs
Other Sorghum bicolor RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.978
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.945
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.945
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.890
MDP0000488588 Malus x domestica MDP0000488588 N 0.879
SB01G005500 Sorghum bicolor Sb01g005500 N 0.879
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.868
MDP0000124048 Malus x domestica MDP0000124048 N 0.857
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.846
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.846
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.846
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.846
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.846
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.846
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.846
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.846
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.846
mgf009938m Mimulus guttatus mgf009938m N 0.846
mgf013853m Mimulus guttatus mgf013853m N 0.846
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.846
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.846
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.846
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.846
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.846
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.846
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.846
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.846
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.846
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.846
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.835
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.835
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.835
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.835
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.835
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.835
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.835
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.835
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.835
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.835
MDP0000718677 Malus x domestica MDP0000718677 N 0.824
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.824
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.824
mgf013935m Mimulus guttatus mgf013935m N 0.824
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.824
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.824
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.813
SB01G008170 Sorghum bicolor Sb01g008170 N 0.813
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.813
MDP0000129009 Malus x domestica MDP0000129009 N 0.813
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.802
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.802
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.802
PK23716.1 Cannabis sativa PK23716.1 N 0.802
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.802
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.802
29950.m001140 Ricinus communis 29950.m001140 N 0.802
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.780
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.780
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.780
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.780
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.780
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.769
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
ppa003664m Prunus persica ppa003664m N 0.758
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.758
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.758
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.758
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.758
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.747
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.736
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
29929.m004643 Ricinus communis 29929.m004643 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.725
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.703
ppa018635m Prunus persica ppa018635m N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703