GSVIVG00033395001 (Vitis vinifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 GSVIVG00033395001 T62220_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00033395001 YTH 487 577

Links

Other YTH family RBPs
Other Vitis vinifera RBPs

162 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB02G003990 Sorghum bicolor Sb02g003990 N 0.846
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.835
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.835
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.835
mgf013853m Mimulus guttatus mgf013853m N 0.835
mgf009938m Mimulus guttatus mgf009938m N 0.835
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.835
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.835
SB01G005500 Sorghum bicolor Sb01g005500 N 0.824
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.824
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.813
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.813
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.813
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.813
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.813
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.813
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.813
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.813
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.813
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.813
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.813
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.813
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.813
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.813
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.813
MDP0000124048 Malus x domestica MDP0000124048 N 0.813
MDP0000718677 Malus x domestica MDP0000718677 N 0.813
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
mgf013935m Mimulus guttatus mgf013935m N 0.813
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.813
MDP0000488588 Malus x domestica MDP0000488588 N 0.802
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.802
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.802
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.802
MDP0000129009 Malus x domestica MDP0000129009 N 0.802
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.802
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.802
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.802
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.802
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.802
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.802
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.802
29950.m001140 Ricinus communis 29950.m001140 N 0.802
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.802
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.791
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.791
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.791
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.791
PK23716.1 Cannabis sativa PK23716.1 N 0.791
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.791
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.791
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.791
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.791
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.791
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.791
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.791
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.791
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
ppa003664m Prunus persica ppa003664m N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
SB01G008170 Sorghum bicolor Sb01g008170 N 0.769
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.769
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.758
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.758
ppa002483m Prunus persica ppa002483m N 0.758
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.758
PK17832.1 Cannabis sativa PK17832.1 N 0.758
ppa002588m Prunus persica ppa002588m N 0.758
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.758
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.758
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.758
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.747
PK23104.1 Cannabis sativa PK23104.1 N 0.747
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.747
SB03G031190 Sorghum bicolor Sb03g031190 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.747
mgf019821m Mimulus guttatus mgf019821m N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.736
29955.m001158 Ricinus communis 29955.m001158 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.736
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.736
29890.m000285 Ricinus communis 29890.m000285 N 0.736
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.736
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.725
29889.m003364 Ricinus communis 29889.m003364 N 0.725
PK01736.1 Cannabis sativa PK01736.1 N 0.725
SB06G027960 Sorghum bicolor Sb06g027960 N 0.725
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.725
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.714
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703