B9GXX7_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0003s20840 T62243_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s20840.1 YTH 479 569

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.890
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.890
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.890
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.890
MDP0000124048 Malus x domestica MDP0000124048 N 0.890
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.890
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.879
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.879
MDP0000718677 Malus x domestica MDP0000718677 N 0.879
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.879
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.879
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.879
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.879
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.879
PK23716.1 Cannabis sativa PK23716.1 N 0.879
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.879
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.879
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.879
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.879
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.879
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.879
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.879
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.879
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.868
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.868
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.868
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.868
MDP0000129009 Malus x domestica MDP0000129009 N 0.868
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.868
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.868
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.868
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.868
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.868
SB02G003990 Sorghum bicolor Sb02g003990 N 0.868
mgf013853m Mimulus guttatus mgf013853m N 0.857
mgf009938m Mimulus guttatus mgf009938m N 0.857
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
MDP0000488588 Malus x domestica MDP0000488588 N 0.846
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.846
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.846
SB01G005500 Sorghum bicolor Sb01g005500 N 0.846
mgf013935m Mimulus guttatus mgf013935m N 0.835
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.835
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.835
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.835
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.835
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.835
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.835
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.824
SB01G008170 Sorghum bicolor Sb01g008170 N 0.824
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.824
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.824
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.813
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.813
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.813
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.813
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.802
SB06G027960 Sorghum bicolor Sb06g027960 N 0.802
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.802
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.791
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.791
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.780
29950.m001140 Ricinus communis 29950.m001140 N 0.780
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.769
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.769
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
29929.m004643 Ricinus communis 29929.m004643 N 0.736
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
MDP0000552419 Malus x domestica MDP0000552419 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
30169.m006347 Ricinus communis 30169.m006347 N 0.736
MDP0000248088 Malus x domestica MDP0000248088 N 0.736
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703