XM_002891791.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh1_pg.C_scaffold_1004195 T62201_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1004195 YTH 438 528

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.956
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.945
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.945
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.912
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.912
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.912
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.912
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.890
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.890
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.890
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.890
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.890
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.890
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.890
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.890
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.890
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.890
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.890
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.890
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.890
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.890
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.890
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.890
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.890
MDP0000124048 Malus x domestica MDP0000124048 N 0.879
PK23716.1 Cannabis sativa PK23716.1 N 0.879
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.879
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.879
MDP0000718677 Malus x domestica MDP0000718677 N 0.879
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.879
MDP0000129009 Malus x domestica MDP0000129009 N 0.868
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.868
mgf009938m Mimulus guttatus mgf009938m N 0.857
mgf013853m Mimulus guttatus mgf013853m N 0.857
mgf013935m Mimulus guttatus mgf013935m N 0.857
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.846
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
MDP0000488588 Malus x domestica MDP0000488588 N 0.846
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.846
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.835
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.835
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.824
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
SB01G008170 Sorghum bicolor Sb01g008170 N 0.824
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.824
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.824
SB02G003990 Sorghum bicolor Sb02g003990 N 0.824
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.813
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.802
SB01G005500 Sorghum bicolor Sb01g005500 N 0.802
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.802
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.791
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.791
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.780
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.780
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.780
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.780
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.780
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.780
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.769
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
29950.m001140 Ricinus communis 29950.m001140 N 0.747
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
30169.m006347 Ricinus communis 30169.m006347 N 0.736
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
ppa003664m Prunus persica ppa003664m N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.725
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.725
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.725
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.725
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
ppa002483m Prunus persica ppa002483m N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703