MDP0000129009 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000129009 T62527_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000129009 YTH 207 297

Links

Other YTH family RBPs
Other Malus x domestica RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000718677 Malus x domestica MDP0000718677 N 0.989
PK23716.1 Cannabis sativa PK23716.1 N 0.945
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.912
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.879
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.879
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.879
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.879
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.879
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.879
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.879
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.879
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.879
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.879
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.879
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.879
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.879
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.879
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.879
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.868
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.868
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.868
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.868
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.868
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.868
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.868
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.868
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.868
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.868
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.868
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.868
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.868
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.868
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.868
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.868
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.868
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.857
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.857
mgf013853m Mimulus guttatus mgf013853m N 0.857
MDP0000124048 Malus x domestica MDP0000124048 N 0.857
mgf013935m Mimulus guttatus mgf013935m N 0.857
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.857
mgf009938m Mimulus guttatus mgf009938m N 0.857
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.846
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.846
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.846
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.846
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.835
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.835
MDP0000488588 Malus x domestica MDP0000488588 N 0.835
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.824
SB01G005500 Sorghum bicolor Sb01g005500 N 0.824
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.824
SB01G008170 Sorghum bicolor Sb01g008170 N 0.824
SB02G003990 Sorghum bicolor Sb02g003990 N 0.813
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.802
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.802
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.791
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.791
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.791
29950.m001140 Ricinus communis 29950.m001140 N 0.791
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.791
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.791
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.780
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.780
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.780
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.769
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.769
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.769
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
30169.m006347 Ricinus communis 30169.m006347 N 0.758
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.758
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
ppa002483m Prunus persica ppa002483m N 0.714
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
PK17832.1 Cannabis sativa PK17832.1 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
ppa018635m Prunus persica ppa018635m N 0.703
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703