Cucsa.142200 (Cucumis sativus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Cucsa.142200 T62347_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.142200.1 YTH 508 598
Cucsa.142200.2 YTH 507 597
Cucsa.142200.3 YTH 507 597
Cucsa.142200.4 YTH 508 596
Cucsa.142200.5 YTH 478 568
Cucsa.142200.6 YTH 508 598
Cucsa.142200.7 YTH 439 529
Cucsa.142200.8 YTH 439 529

Links

Other YTH family RBPs
Other Cucumis sativus RBPs

167 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000718677 Malus x domestica MDP0000718677 N 0.923
PK23716.1 Cannabis sativa PK23716.1 N 0.923
MDP0000129009 Malus x domestica MDP0000129009 N 0.912
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.901
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.901
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.901
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.901
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.901
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.890
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.890
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.890
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.890
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.890
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.879
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.879
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.879
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.879
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.879
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.879
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.879
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.879
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.879
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.879
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.879
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.879
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.868
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.868
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.868
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.868
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.868
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.868
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.868
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.857
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
mgf009938m Mimulus guttatus mgf009938m N 0.846
mgf013853m Mimulus guttatus mgf013853m N 0.846
MDP0000124048 Malus x domestica MDP0000124048 N 0.846
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.846
mgf013935m Mimulus guttatus mgf013935m N 0.846
MDP0000488588 Malus x domestica MDP0000488588 N 0.846
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.835
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.835
SB01G008170 Sorghum bicolor Sb01g008170 N 0.835
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.835
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.835
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.824
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.824
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.824
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.824
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.824
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.813
SB02G003990 Sorghum bicolor Sb02g003990 N 0.813
SB01G005500 Sorghum bicolor Sb01g005500 N 0.813
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.813
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.802
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.802
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.791
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.791
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.791
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.791
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.791
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.791
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.780
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.780
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.769
29950.m001140 Ricinus communis 29950.m001140 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.758
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.758
ppa002483m Prunus persica ppa002483m N 0.747
ppa002588m Prunus persica ppa002588m N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
30169.m006347 Ricinus communis 30169.m006347 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.736
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
29929.m004643 Ricinus communis 29929.m004643 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.725
mgf014829m Mimulus guttatus mgf014829m N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.725
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.725
29955.m001158 Ricinus communis 29955.m001158 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
PK02315.1 Cannabis sativa PK02315.1 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.703
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.703
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.703