XM_002884922.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh2_kg.3__1434__AT3G13460.1 T62208_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1434__AT3G13460.1 YTH 492 582

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

160 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 1.000
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.945
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.923
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.923
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.923
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.923
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.923
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.901
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.901
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.901
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.901
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.901
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.901
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.901
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.901
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.901
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.901
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.901
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.901
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.901
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.901
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.901
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.901
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.901
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.890
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.890
MDP0000718677 Malus x domestica MDP0000718677 N 0.890
PK23716.1 Cannabis sativa PK23716.1 N 0.890
MDP0000124048 Malus x domestica MDP0000124048 N 0.890
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.890
MDP0000129009 Malus x domestica MDP0000129009 N 0.879
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.868
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.868
mgf009938m Mimulus guttatus mgf009938m N 0.868
mgf013853m Mimulus guttatus mgf013853m N 0.868
MDP0000488588 Malus x domestica MDP0000488588 N 0.857
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.857
mgf013935m Mimulus guttatus mgf013935m N 0.857
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.846
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.835
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.835
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.835
SB01G008170 Sorghum bicolor Sb01g008170 N 0.835
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
SB02G003990 Sorghum bicolor Sb02g003990 N 0.824
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.824
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.813
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.813
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.813
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.802
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.802
SB01G005500 Sorghum bicolor Sb01g005500 N 0.802
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.791
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.791
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.791
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.791
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.791
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.791
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.780
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.780
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.758
29950.m001140 Ricinus communis 29950.m001140 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
30169.m006347 Ricinus communis 30169.m006347 N 0.747
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.736
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.736
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.736
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
PK23104.1 Cannabis sativa PK23104.1 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
ppa003664m Prunus persica ppa003664m N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
29889.m003364 Ricinus communis 29889.m003364 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
mgf017987m Mimulus guttatus mgf017987m N 0.714
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
mgf014143m Mimulus guttatus mgf014143m N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.703
mgf015583m Mimulus guttatus mgf015583m N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
ppa002483m Prunus persica ppa002483m N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.703