mgf013853m (Mimulus guttatus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 mgf013853m T62424_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf013853m YTH 495 585

Links

Other YTH family RBPs
Other Mimulus guttatus RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf009938m Mimulus guttatus mgf009938m N 1.000
mgf013935m Mimulus guttatus mgf013935m N 0.923
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.901
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.890
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.890
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.890
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.890
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.890
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.890
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.890
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.890
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.890
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.890
SB01G005500 Sorghum bicolor Sb01g005500 N 0.890
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.890
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.890
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.879
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.879
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.879
PK23716.1 Cannabis sativa PK23716.1 N 0.879
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.879
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.879
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.879
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.879
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.879
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.879
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.879
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.879
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.879
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.879
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.879
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.868
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.868
MDP0000718677 Malus x domestica MDP0000718677 N 0.868
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.857
MDP0000124048 Malus x domestica MDP0000124048 N 0.857
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.857
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.857
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.857
MDP0000129009 Malus x domestica MDP0000129009 N 0.857
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.857
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.846
SB02G003990 Sorghum bicolor Sb02g003990 N 0.846
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.846
SB01G008170 Sorghum bicolor Sb01g008170 N 0.846
MDP0000488588 Malus x domestica MDP0000488588 N 0.846
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.846
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.835
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.835
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.835
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.835
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.835
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.835
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.835
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.813
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.813
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.813
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.813
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.813
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.802
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.802
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.802
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.791
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.791
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.791
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.791
29950.m001140 Ricinus communis 29950.m001140 N 0.791
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
SB06G027960 Sorghum bicolor Sb06g027960 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.780
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.780
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.769
30169.m006347 Ricinus communis 30169.m006347 N 0.769
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.769
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.769
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.747
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.747
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.747
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.736
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
PK23104.1 Cannabis sativa PK23104.1 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
ppa018635m Prunus persica ppa018635m N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.736
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.725
MDP0000552419 Malus x domestica MDP0000552419 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
mgf015583m Mimulus guttatus mgf015583m N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.725
mgf014143m Mimulus guttatus mgf014143m N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
mgf014829m Mimulus guttatus mgf014829m N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
PK02315.1 Cannabis sativa PK02315.1 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703