Medtr7g100450 (Medicago truncatula)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Medtr7g100450 T62457_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr7g100450.1 YTH 481 571
Medtr7g100450.2 YTH 478 568
Medtr7g100450.3 YTH 387 477

Links

Other YTH family RBPs
Other Medicago truncatula RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.923
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.923
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.912
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.912
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.890
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.868
29950.m001140 Ricinus communis 29950.m001140 N 0.835
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.835
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.824
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.824
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.824
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.813
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.813
MDP0000718677 Malus x domestica MDP0000718677 N 0.813
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.813
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.802
SB02G003990 Sorghum bicolor Sb02g003990 N 0.802
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.802
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.802
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.802
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.802
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.802
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.802
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.802
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.802
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.802
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.802
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.802
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.802
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.802
MDP0000129009 Malus x domestica MDP0000129009 N 0.802
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.802
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.791
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.791
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.791
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.791
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.791
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.791
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.791
SB01G005500 Sorghum bicolor Sb01g005500 N 0.791
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.791
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.791
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.791
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.791
mgf009938m Mimulus guttatus mgf009938m N 0.791
mgf013853m Mimulus guttatus mgf013853m N 0.791
PK23716.1 Cannabis sativa PK23716.1 N 0.791
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.780
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.780
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.780
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.780
SB01G008170 Sorghum bicolor Sb01g008170 N 0.780
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.769
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.769
mgf013935m Mimulus guttatus mgf013935m N 0.769
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.758
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.758
MDP0000124048 Malus x domestica MDP0000124048 N 0.758
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.758
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.758
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.736
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.736
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
MDP0000488588 Malus x domestica MDP0000488588 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.725
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
SB07G024500 Sorghum bicolor Sb07g024500 N 0.725
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.725
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.725
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
ppa003664m Prunus persica ppa003664m N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.703