Glyma05g30020.1 (Glycine max)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Glyma05g30020.1 T62393_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma05g30020.1 YTH 507 597

Links

Other YTH family RBPs
Other Glycine max RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.989
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.912
PK23716.1 Cannabis sativa PK23716.1 N 0.912
MDP0000718677 Malus x domestica MDP0000718677 N 0.879
MDP0000129009 Malus x domestica MDP0000129009 N 0.879
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.868
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.868
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.868
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.868
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.868
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.857
SB01G008170 Sorghum bicolor Sb01g008170 N 0.857
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.857
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.857
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.857
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.857
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.857
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.857
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.857
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.857
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.846
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.846
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.846
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.846
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.846
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.846
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.846
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.846
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.846
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.846
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.846
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.846
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.846
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.846
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.835
mgf013935m Mimulus guttatus mgf013935m N 0.835
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.835
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.835
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.824
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.824
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.813
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.813
mgf013853m Mimulus guttatus mgf013853m N 0.813
mgf009938m Mimulus guttatus mgf009938m N 0.813
MDP0000124048 Malus x domestica MDP0000124048 N 0.813
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.802
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.802
29950.m001140 Ricinus communis 29950.m001140 N 0.791
MDP0000488588 Malus x domestica MDP0000488588 N 0.791
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.769
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.769
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.769
SB01G005500 Sorghum bicolor Sb01g005500 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.769
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.769
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.769
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.769
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.769
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.758
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
SB02G003990 Sorghum bicolor Sb02g003990 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.747
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.725
30169.m006347 Ricinus communis 30169.m006347 N 0.725
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
MDP0000552419 Malus x domestica MDP0000552419 N 0.725
ppa003664m Prunus persica ppa003664m N 0.725
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.725
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
mgf014829m Mimulus guttatus mgf014829m N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.703
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
ppa002483m Prunus persica ppa002483m N 0.703