29950.m001140 (Ricinus communis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 29950.m001140 T62294_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29950.m001140 YTH 475 565

Links

Other YTH family RBPs
Other Ricinus communis RBPs

148 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.901
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.879
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.857
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.846
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.835
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.824
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.824
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.824
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.824
mgf013935m Mimulus guttatus mgf013935m N 0.813
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.813
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.813
SB01G005500 Sorghum bicolor Sb01g005500 N 0.813
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.813
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.802
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.802
SB01G008170 Sorghum bicolor Sb01g008170 N 0.802
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.802
MDP0000718677 Malus x domestica MDP0000718677 N 0.802
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.802
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.802
SB02G003990 Sorghum bicolor Sb02g003990 N 0.802
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.791
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.791
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.791
mgf009938m Mimulus guttatus mgf009938m N 0.791
mgf013853m Mimulus guttatus mgf013853m N 0.791
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.791
MDP0000129009 Malus x domestica MDP0000129009 N 0.791
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.791
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.791
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.791
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.791
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.791
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.791
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.791
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.791
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.791
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.791
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.791
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.791
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.791
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.791
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.791
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.791
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.791
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.791
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.780
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.780
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.780
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.780
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.780
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.780
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.780
PK23716.1 Cannabis sativa PK23716.1 N 0.780
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.780
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.780
MDP0000124048 Malus x domestica MDP0000124048 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.769
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.769
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.758
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.758
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
MDP0000488588 Malus x domestica MDP0000488588 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.758
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.758
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.758
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
SB07G024500 Sorghum bicolor Sb07g024500 N 0.747
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.747
ppa018635m Prunus persica ppa018635m N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.736
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.736
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
PK23104.1 Cannabis sativa PK23104.1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
MDP0000171737 Malus x domestica MDP0000171737 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.703
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.703
MDP0000617859 Malus x domestica MDP0000617859 N 0.703
MDP0000405927 Malus x domestica MDP0000405927 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.703
PK05579.1 Cannabis sativa PK05579.1 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.703
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703