LjSGA_011466.1 (Lotus japonicus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LjSGA_011466.1 T62520_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_011466.1 YTH 382 464

Links

Other YTH family RBPs
Other Lotus japonicus RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.843
MDP0000199885 Malus x domestica MDP0000199885 N 0.807
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.802
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.795
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.769
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.769
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.769
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.765
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.758
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
ppa018635m Prunus persica ppa018635m N 0.758
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
ppa003664m Prunus persica ppa003664m N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
29889.m003364 Ricinus communis 29889.m003364 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
MDP0000299155 Malus x domestica MDP0000299155 N 0.723
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.723
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.713
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703