LjT10H22.120.nd (Lotus japonicus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LjT10H22.120.nd T62525_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjT10H22.120.nd YTH 133 206

Links

Other YTH family RBPs
Other Lotus japonicus RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000199885 Malus x domestica MDP0000199885 N 0.872
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.843
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.817
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.813
MDP0000299155 Malus x domestica MDP0000299155 N 0.787
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
mgf015583m Mimulus guttatus mgf015583m N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.758
ppa018635m Prunus persica ppa018635m N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.741
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
PK23104.1 Cannabis sativa PK23104.1 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
29889.m003364 Ricinus communis 29889.m003364 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.713
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.707
MDP0000171737 Malus x domestica MDP0000171737 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703