BGIOSIBCE003171 (Oryza indica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BGIOSIBCE003171 T61939_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE003171 YTH 406 496

Links

Other YTH family RBPs
Other Oryza indica RBPs

199 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 1.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.978
SB03G031190 Sorghum bicolor Sb03g031190 N 0.967
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.967
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.956
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.901
ppa003664m Prunus persica ppa003664m N 0.890
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.890
29955.m001158 Ricinus communis 29955.m001158 N 0.890
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.890
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.890
MDP0000231231 Malus x domestica MDP0000231231 N 0.879
MDP0000286471 Malus x domestica MDP0000286471 N 0.879
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.879
MDP0000171737 Malus x domestica MDP0000171737 N 0.879
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.868
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.857
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.857
PK23104.1 Cannabis sativa PK23104.1 N 0.846
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.846
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.835
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.835
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.835
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.835
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.835
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.824
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.824
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.824
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.824
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.813
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.813
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.813
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.813
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.813
ppa002588m Prunus persica ppa002588m N 0.813
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.813
ppa002483m Prunus persica ppa002483m N 0.813
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.813
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.813
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
ppa018635m Prunus persica ppa018635m N 0.813
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.813
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.813
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.813
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.813
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.813
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.813
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.813
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.813
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.813
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.802
MDP0000132385 Malus x domestica MDP0000132385 N 0.802
29889.m003364 Ricinus communis 29889.m003364 N 0.802
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
MDP0000306387 Malus x domestica MDP0000306387 N 0.802
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.802
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
PK02315.1 Cannabis sativa PK02315.1 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.791
PK17832.1 Cannabis sativa PK17832.1 N 0.791
mgf015583m Mimulus guttatus mgf015583m N 0.791
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.791
mgf017987m Mimulus guttatus mgf017987m N 0.791
mgf014143m Mimulus guttatus mgf014143m N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.780
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.780
PK26094.1 Cannabis sativa PK26094.1 N 0.769
mgf019821m Mimulus guttatus mgf019821m N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
29929.m004643 Ricinus communis 29929.m004643 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
PK01736.1 Cannabis sativa PK01736.1 N 0.769
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.758
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.758
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.758
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
mgf014829m Mimulus guttatus mgf014829m N 0.758
29890.m000285 Ricinus communis 29890.m000285 N 0.758
PK05579.1 Cannabis sativa PK05579.1 N 0.747
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
MDP0000488248 Malus x domestica MDP0000488248 N 0.736
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
mgf019846m Mimulus guttatus mgf019846m N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.725
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
ppa003557m Prunus persica ppa003557m N 0.725
SB02G003990 Sorghum bicolor Sb02g003990 N 0.725
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.725
ppa002677m Prunus persica ppa002677m N 0.714
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
MDP0000199885 Malus x domestica MDP0000199885 N 0.714
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.714
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.703
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.703
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.703
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.703
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703